Methanosarcina sp. WWM596: MSWHS_0198
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Entry
MSWHS_0198 CDS
T03852
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
meq
Methanosarcina sp. WWM596
Brite
KEGG Orthology (KO) [BR:
meq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
meq03016
]
MSWHS_0198
Enzymes [BR:
meq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MSWHS_0198
Transfer RNA biogenesis [BR:
meq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MSWHS_0198
Prokaryotic type
tRNA splicing ligases
MSWHS_0198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AKB17061
LinkDB
All DBs
Position
239293..240795
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AA seq
500 aa
AA seq
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MVENEDIGTEELSVESVPRDIKHMVLKLSDYSWEIPKGHIPNMKVPGRLFVSENLLGGIE
PDTIDQIANVATLPGIQKYSMAMPDAHLGYGFAIGGVAAFDAEEGVISPGGVGFDINCGV
RLIRTNLQKEDVVPEIKRLTDELFNNVPSGVGSKSRFRASDRELDNAFLEGAKWAVEAGY
GVEADVEHCEGNGYLEGADTSHVSTKARNRGKPQIGTLGSGNHFLEVQYVDKIYDREVAS
AFGLEEGQVTVMIHCGSRGAGHQICTDHLKELSQAVKKYGIEIPDKQLACAPAQSREAQN
YFKAMLCAANYAWANRQMITHWTRESFEKVFGRDADDLGMSLLYDVAHNVAKLEEHNIDG
RKKEVYVHRKGATRAFPSGHPEVPAAYRDVGQPVLIPGSMGTPSFILCGAKEAMDVSFGS
ACHGAGRIMSRAHAKQEFHGQSIKENLEAQGITVRATHPSVIAEEAPGVYKSSSEVVNVV
HELGIARKIARVIPLGVAKG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggtagaaaatgaagatatcggtactgaggaattgagtgtggaaagtgtgccccgagac
ataaaacacatggttctgaagctttccgattatagctgggaaattccgaaagggcatatt
cctaatatgaaggttccagggcgcctgtttgtatctgaaaatttgcttggaggcattgag
cccgatactatcgaccagatcgcaaacgtagcaactcttcctggcattcagaaatattcc
atggcaatgcctgatgcccaccttggttatggttttgctatagggggcgttgcagctttt
gatgcagaggaaggagttatcagccccggtggagtgggttttgatatcaattgcggggtg
cggctaatccgcacaaatcttcaaaaggaagatgtagttcctgaaataaaaaggctgact
gatgagctgtttaataacgtgccttcaggtgtcggatccaaaagccggttcagggcttct
gaccgggaactggacaatgcatttcttgagggtgcaaagtgggcagtagaagccgggtat
ggtgtggaagcggatgtggaacactgtgaagggaatggctacctggaaggtgcagatact
tctcatgtgagcacaaaggcaaggaaccgtggaaaacctcaaataggaactctcggtagc
ggtaaccattttcttgaagtccagtatgtggacaagatttatgacagggaagtggcttcg
gccttcgggcttgaagaaggccaggttacggtaatgatccactgcgggtcaagaggcgca
gggcatcagatctgcactgatcatctaaaagaactctctcaggctgttaagaagtatggg
attgaaattccggataagcagcttgcctgtgctccggctcagtcaagggaagcccagaac
tatttcaaagccatgctctgtgctgcaaactatgcctgggcaaacaggcagatgatcact
cactggacacgcgaatcgtttgaaaaggtatttggcagagatgccgatgatttgggaatg
agcctcctgtatgacgttgcgcataatgtagcaaaacttgaagaacataacattgacggc
aggaaaaaagaggtttacgtgcatagaaagggggcaacaagagcatttccctccgggcac
cctgaagttccggctgcatacagggacgtgggacagccggttttaattcctgggagcatg
ggaacaccttcttttatactctgtggtgcaaaagaggctatggatgtctctttcggcagt
gcctgccatggagccgggaggattatgagcagagcacatgcaaagcaagagttccacggg
caaagcataaaagagaaccttgaagcccaaggaatcactgtaagggcaactcacccttcc
gtaattgcagaagaagctcctggcgtgtacaagtcaagcagtgaggtagtaaatgtcgtg
cacgaacttggcattgcccgcaagattgcaagagttattccgcttggggttgcaaaaggt
taa
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