Methanosarcina sp. WWM596: MSWHS_0480
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Entry
MSWHS_0480 CDS
T03852
Name
(GenBank) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
meq
Methanosarcina sp. WWM596
Pathway
meq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSWHS_0480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meq03019
]
MSWHS_0480
Messenger RNA biogenesis [BR:
meq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSWHS_0480
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MSWHS_0480
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GFIT
Motif
Pfam:
ECR1_N
EXOSC1
OB_RRP5_4th
ECR1_N_2
HypA
zf-C3HC4_3
Motif
Other DBs
NCBI-ProteinID:
AKB17343
UniProt:
A0A0E3KT19
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Position
570633..571691
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AA seq
352 aa
AA seq
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MIRIRKNKTTRKKLTGPGEGKSIDEKSVPPTGENRDQSRDQFKSQPRDQSRGSQRDQSRG
SQRDQSRGPQRDQSRGPQRDQSRGPQRDQSRGPQRDQSRSSQRDQSRGPQRDQSRDHFKG
QSRDQFKGDPNKKRRFPYPKKTPRDRKEMSGFRSSVGETVISEEELEKGDFVLPGELVGT
TEEFKPGPGAAVIAGDIYSTATGNVLIDRKARVVSVKPNTLTPNILKVGDIIYGRITDVR
ESGAMVEVAGIEGKENREIVGSRPGDIHVSNVRDSYVKRLLDEFRPSDIIRARVIEVDRM
RLTTAEDSLGVVKAYCSNCRGELVPEGKKLKCPVCNMTETRKISTGYGKGIR
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgattagaatccgaaaaaataagactactaggaaaaaattaacaggtcctggtgaagga
aagtctattgatgaaaaatcggtcccgccaactggcgaaaacagggatcagtcaagggat
cagtttaaaagccagccccgagatcagtccaggggctcgcaacgagatcagtccaggggc
tcgcaacgagatcagtccaggggcccgcaacgagatcagtccaggggcccgcaacgagat
cagtccaggggtccgcaacgagaccagtccaggggtccgcaacgagaccagtccaggagt
tcgcaacgagaccagtccaggggtccgcaacgagaccagtcccgagatcatttcaagggt
cagtcccgagaccagttcaagggtgatcctaacaaaaagagaaggttcccatatcctaag
aaaactccccgagataggaaggaaatgtcaggtttcaggtcttctgtcggagaaaccgtg
atatctgaagaagaacttgaaaaaggagattttgttcttccgggagaacttgttggtact
acggaggaattcaagccaggtcccggagcagcagtaattgccggagatatttattctact
gccacaggcaatgtactcattgacagaaaagccagggtggtctcggttaagccaaatact
cttactccaaatattcttaaagtcggggacataatttacggtaggatcactgacgtccgc
gagtccggggcaatggtggaagttgcaggaattgaaggaaaagaaaacagggaaattgtc
ggatcaaggccaggagatatccacgtttcaaatgtaagggactcatatgtcaagagactg
ttagatgagttcaggccgtctgatattataagggccagagtcattgaagttgacagaatg
cgccttaccacagccgaagattctcttggagttgtaaaagcttactgctcaaactgcaga
ggcgaactcgtgccggaagggaaaaagcttaaatgccctgtctgcaatatgactgaaacc
cgtaagatctcaaccgggtacgggaaaggaataaggtaa
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