KEGG   Methanosarcina sp. WWM596: MSWHS_0480
Entry
MSWHS_0480        CDS       T03852                                 
Name
(GenBank) hypothetical protein
  KO
K07573  exosome complex component CSL4
Organism
meq  Methanosarcina sp. WWM596
Pathway
meq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:meq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSWHS_0480
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:meq03019]
    MSWHS_0480
Messenger RNA biogenesis [BR:meq03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MSWHS_0480
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     MSWHS_0480
SSDB
Motif
Pfam: ECR1_N EXOSC1 OB_RRP5_4th ECR1_N_2 HypA zf-C3HC4_3
Other DBs
NCBI-ProteinID: AKB17343
UniProt: A0A0E3KT19
LinkDB
Position
570633..571691
AA seq 352 aa
MIRIRKNKTTRKKLTGPGEGKSIDEKSVPPTGENRDQSRDQFKSQPRDQSRGSQRDQSRG
SQRDQSRGPQRDQSRGPQRDQSRGPQRDQSRGPQRDQSRSSQRDQSRGPQRDQSRDHFKG
QSRDQFKGDPNKKRRFPYPKKTPRDRKEMSGFRSSVGETVISEEELEKGDFVLPGELVGT
TEEFKPGPGAAVIAGDIYSTATGNVLIDRKARVVSVKPNTLTPNILKVGDIIYGRITDVR
ESGAMVEVAGIEGKENREIVGSRPGDIHVSNVRDSYVKRLLDEFRPSDIIRARVIEVDRM
RLTTAEDSLGVVKAYCSNCRGELVPEGKKLKCPVCNMTETRKISTGYGKGIR
NT seq 1059 nt   +upstreamnt  +downstreamnt
atgattagaatccgaaaaaataagactactaggaaaaaattaacaggtcctggtgaagga
aagtctattgatgaaaaatcggtcccgccaactggcgaaaacagggatcagtcaagggat
cagtttaaaagccagccccgagatcagtccaggggctcgcaacgagatcagtccaggggc
tcgcaacgagatcagtccaggggcccgcaacgagatcagtccaggggcccgcaacgagat
cagtccaggggtccgcaacgagaccagtccaggggtccgcaacgagaccagtccaggagt
tcgcaacgagaccagtccaggggtccgcaacgagaccagtcccgagatcatttcaagggt
cagtcccgagaccagttcaagggtgatcctaacaaaaagagaaggttcccatatcctaag
aaaactccccgagataggaaggaaatgtcaggtttcaggtcttctgtcggagaaaccgtg
atatctgaagaagaacttgaaaaaggagattttgttcttccgggagaacttgttggtact
acggaggaattcaagccaggtcccggagcagcagtaattgccggagatatttattctact
gccacaggcaatgtactcattgacagaaaagccagggtggtctcggttaagccaaatact
cttactccaaatattcttaaagtcggggacataatttacggtaggatcactgacgtccgc
gagtccggggcaatggtggaagttgcaggaattgaaggaaaagaaaacagggaaattgtc
ggatcaaggccaggagatatccacgtttcaaatgtaagggactcatatgtcaagagactg
ttagatgagttcaggccgtctgatattataagggccagagtcattgaagttgacagaatg
cgccttaccacagccgaagattctcttggagttgtaaaagcttactgctcaaactgcaga
ggcgaactcgtgccggaagggaaaaagcttaaatgccctgtctgcaatatgactgaaacc
cgtaagatctcaaccgggtacgggaaaggaataaggtaa

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