Methanosarcina sp. WWM596: MSWHS_1717
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Entry
MSWHS_1717 CDS
T03852
Name
(GenBank) DNA double-strand break repair Rad50 ATPase
Organism
meq
Methanosarcina sp. WWM596
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_27
AAA_23
SMC_N
GAS
AAA_29
Motif
Other DBs
NCBI-ProteinID:
AKB18580
UniProt:
A0A0E3NKB9
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Position
2104964..2108839
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AA seq
1291 aa
AA seq
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MKIDAIHIDGFGKFSKLSVEDLPSGLVILTGANEAGKSTLFTFIRRMFFGIPNTRCNLYP
PLEGGQHGGRLVVIDSERKRWVIERNTGRKDDVKVVLPNGNTGSKTELLKLLGHADRNVF
ENIYAFGLEELQSFETLNDQSINSKLYSAGTGVGVSIPELMKSINNMESNLYKPRGRKPL
INELLRKIRKTNDEIAEFEEAQKKYDTLHLELEQRNLEIDQLKEKSQNIRKKLNHVQNLL
SVWDDWRALQESKTDLGTLPELGSFPEKGEEKLERLLDKIEGIREDVSRLEQDLEKNAVN
ERNLSPDESLLRQKDAVLELESGLGKYRSEVKTLPTLEAKLKQEEARLSELLLELGPDWD
EEALNHFDRSIPAKETVIKMRKAVEEIEAKIKEIQNELKQVLTSIERVLQEKDVFEESLL
VYRNQVIELGNGIEKYRADKNSLLSETREVQARKAELKETLLGLGEGWDETTLARFEHST
PSKENVLAKRREMEETEKTIERYHDRLELALGEIEEVREEIEALEEKLGAYSKLPDPEEV
KQGLEAISYLRVKQPLLREKENELKNLEKDLEKEEMLFAAFRPRETEHEEGLPLWPAEML
LLAGSMGLIYEYINGALLPGLGIFFLLFATSAIYFLKARKKPSSQPSSPPAGEERLKGTE
ARKQKAQDSKEKLSGEIATLKEYMKIQAKKCGFEDIPDSSVREQKANELQRVLLDLKTAG
ELRQGKDKLRKKLEKLDAAYQELEGKLKSGEKKQEEVRQEWKEWLLSSGLDLELSPEHVL
EHLSTIKACLEKQKSVKELEKQVQIRVAAVKKYEEKALGVLEACERPVSGITLDSEIAKL
REDVSFAYNQAERMRTLELESESLEHKKEELEARLLEERTQRDALSEKWTLWLGDYGLDP
SLSVESVLEIFSVIRTCFDRQRTIRSLEEQIASGKTSIEAYEAKVAGVLQECRCPFFGLS
FDTQVEKLRSNLEEASEEARKLEQLKMRSKELKIEVQAAREKSETAEKELAVLLESGSAA
TEEEFRENARHWAQRTELENKVREAEQQIRRVSGDGEKYKLFVEELQALDPPSLEEKKRR
LEECLETLEQETSENMDRRGAIGNQIEQLEHGSEGSLARVMQESLLGDLHEKSREWASLV
LARKVLAKAIEVYEKERQPAVIVEAQAFFTKVTGGRYTRIYSPLNSSEIYVEDREGRQKS
VQELSRGTAEQLYLSLRFGFIREFGRHSESLPVVFDDVLVNFDPERCKSTCEAIKDLVPG
NQLFYFTCHPETVEILAGRFPEARIVDLDAV
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattgatgccattcatatcgacggatttggcaagttttccaagctttcggtggaa
gacctgccttccggcctggtcatattaacaggagcaaatgaggcaggaaaatcaacatta
ttcacttttatccggaggatgttttttggcatccccaacacaaggtgcaacctctatccc
ccacttgaaggagggcagcatgggggaagacttgttgtaatcgattctgaaaggaagcgc
tgggtcatagagagaaacacaggccgaaaagacgatgtaaaagtcgtgcttcccaatggg
aataccgggagcaaaactgaacttcttaaactcctgggtcatgcagacaggaacgttttt
gaaaacatctatgcttttggccttgaagagttgcagagttttgagaccctgaacgaccag
agcatcaacagcaaactctacagtgcaggcacaggggtcggagtctccattccggaactt
atgaagtccatcaacaacatggaaagcaacctgtataaacccaggggcagaaaacccctt
attaatgagctactaagaaaaatcaggaagaccaatgacgaaattgccgaatttgaagaa
gcccagaaaaaatacgatacccttcatctcgaacttgaacagagaaacctggaaattgat
cagttaaaagaaaagtcccagaatatacggaaaaaattaaaccacgtccagaacctgctt
tccgtatgggacgactggagagccctgcaggagtcaaaaactgaccttggaactttgccc
gagcttgggagtttccctgaaaaaggggaagaaaagcttgaaaggctcctggataaaatt
gagggaataagggaagatgtttcacggctggagcaggatctggaaaaaaatgccgttaac
gaacgaaacctttctccggacgaaagcctgctcagacagaaagatgcggtgcttgaactt
gaaagcgggcttgggaaatacaggtccgaagtaaaaacgctcccgaccctggaagcaaag
ctcaagcaggaagaagccaggctttccgagctcctcctggaactgggtccggactgggat
gaagaggctctgaaccactttgaccgttcaatcccggcaaaggaaaccgtcatcaagatg
cgaaaggcggtagaggaaattgaggctaaaataaaggagatccaaaacgagctcaagcag
gtcctcaccagcatcgaacgggtccttcaggaaaaagacgtctttgaagaaagcctcctg
gtgtacaggaaccaagtaatcgaacttggaaatggaatcgagaaatatcgggctgataag
aactccctcctttccgaaacccgggaagttcaggccagaaaagccgaactgaaggaaacc
cttttagggctcggggaaggctgggacgaaactacccttgcccgtttcgagcattcgacc
ccttcaaaggaaaacgtgcttgcaaagcgaagggaaatggaagagactgaaaaaacaatc
gaaaggtaccacgacagactcgaacttgcccttggggaaatcgaagaagtccgcgaggaa
atcgaagccctggaagaaaaactcggggcatactcaaagcttcccgaccctgaagaggta
aagcagggacttgaagccataagctacctcagggtgaagcagcctctcctaagggaaaaa
gaaaacgaactcaaaaacctggaaaaagacctggaaaaagaagagatgctttttgcagcc
ttcaggccccgagaaactgaacatgaggaagggcttcccctctggcctgcagaaatgctc
ctgcttgcaggcagtatgggcctgatttacgagtacataaacggagccctgctccccggg
cttggcatatttttcctcctttttgctacttctgccatatacttcctgaaagccaggaaa
aagccctcgagtcagccgtcaagtcctcctgccggcgaggagcgcctgaaagggaccgaa
gcccggaaacaaaaagcacaggactcaaaggaaaagctgtccggagagattgctaccctg
aaagaatacatgaaaatccaggcaaaaaagtgtgggtttgaagacattcccgattcctcg
gttcgggaacagaaagccaatgaactgcagagagtcctgcttgatttgaaaactgccggg
gaactgcgccagggaaaggacaagctccggaagaagctggagaagttagatgcagcttac
caggaacttgaaggtaagctgaagtctggagagaaaaagcaggaagaggttcgccaggaa
tggaaagaatggcttctttcttcagggcttgacctggaactttctcctgagcatgtgctt
gaacacctttccacgatcaaagcctgcctggaaaagcaaaaaagcgttaaagagctggaa
aaacaggtgcagatcagggtagctgctgttaaaaagtacgaagaaaaagcccttggcgtt
ctggaagcctgcgaaagacctgtttcgggaatcacacttgacagtgaaatagcaaagctc
agggaggatgtaagttttgcatataaccaggctgaaaggatgaggacccttgaacttgaa
tccgaaagccttgagcacaaaaaagaagagctcgaagcccgactccttgaggaaagaacg
caaagggacgccctctccgaaaagtggactctctggcttggagattacgggcttgatccc
tcactttctgtagaaagcgtgcttgaaatcttctcggtaatcaggacctgctttgatagg
cagcggacgatccggagccttgaggaacagatagcttccggcaaaacttcgatagaagcc
tatgaagcaaaggttgccggggtcctgcaggaatgcagatgtccgtttttcgggctttct
ttcgatacccaggttgaaaaacttcgttcgaaccttgaagaggcatccgaggaggcaagg
aaactggagcagctgaaaatgaggtcaaaagaactcaagatcgaagttcaggcagcccgg
gaaaagtctgaaactgctgaaaaagagcttgcagttcttcttgagtccggctctgcagca
acagaagaagagttccgtgaaaatgcacggcactgggctcagcggaccgagctagaaaac
aaggtaagggaagctgaacagcagatccgaagggtttccggggacggggaaaagtataag
cttttcgtagaagaacttcaagccttagaccccccaagcctggaagaaaaaaaacgcagg
ctggaggaatgcctggaaacccttgaacaggagacctccgagaacatggacagacgtgga
gcgataggaaaccagatcgaacagctcgaacacggaagtgaaggttccctggcaagggta
atgcaggaaagccttctgggagaccttcacgaaaagtcaagggaatgggcatccctggtc
cttgcccggaaagtccttgccaaagcaatcgaagtctatgaaaaagaaaggcagcccgca
gtcatcgtggaagcccaggcctttttcacaaaggtcactggaggcaggtacacgcggatt
tattctccgctcaactcttccgagatttacgttgaagaccgggaaggccgccagaagagc
gtccaggaactcagccggggaacagctgaacagctttatctctccctgcgtttcggtttt
ataagggaattcgggaggcattcggaatctcttcctgtcgtttttgatgacgtgctggta
aactttgaccccgaacgctgcaaaagcacctgtgaagccataaaggaccttgtcccgggc
aaccagctcttttatttcacctgccaccccgaaaccgtagaaattcttgcaggaaggttc
ccggaagcccggattgtagaccttgatgcggtgtaa
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