Methanosarcina sp. WWM596: MSWHS_2283
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Entry
MSWHS_2283 CDS
T03852
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
meq
Methanosarcina sp. WWM596
Pathway
meq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSWHS_2283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meq03019
]
MSWHS_2283
03009 Ribosome biogenesis [BR:
meq03009
]
MSWHS_2283
Enzymes [BR:
meq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSWHS_2283
Messenger RNA biogenesis [BR:
meq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSWHS_2283
Ribosome biogenesis [BR:
meq03009
]
Prokaryotic type
rRNA helicases
MSWHS_2283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ERCC3_RAD25_C
CMS1
P-loop_SecA
HAUS5
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AKB19146
UniProt:
A0A0E3L348
LinkDB
All DBs
Position
complement(2785403..2787178)
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AA seq
591 aa
AA seq
DB search
MEKLAKFKALGLSDSTLKALKKKGFEEPTPIQEKVIPLFLKGESDIIGQAQTGTGKTTAF
GAPIIDKIPEKSGHVQAIILTPTRELAIQVSEELNSIKGDKKLNIVPIYGGQSMTQQLRM
LKIGVDIVVGTPGRVIDHIERKSLKLEHISYFVLDEADEMLNMGFIDDIKEILKATGPDK
RMLFFSATMPKAILGIVKKYMQNYEHVTIEKEELTANLTEQIYFEVHENDKFEALSRIID
IEDEFYGLVFCRTKTDTSQLAQKLSDRGYLADALNGDLSQQEREKILNKFRKQKINILAA
TDVAARGIDIMNLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSSEFRRLTYIK
KTSKSEMKKGRIPEIKDVIKAKRTRVKAELEDTIKTEEYGDCLEMSEKLLEEYPAEKILA
ALLKYAFKEKFDESMYTEISGGSSYVDRKGKTRLFIAMGKVDGMTPEKLAYFIQEELGDS
ELKVRDAEIFPHFSFVSIPFAQAEALLEIFKNKRRGSKPFVELAQKSRRGSSNGSNARNS
SGSLRSGGYSRSGGSSRSGGGSRSSGSSRSSGSSRSSGSSRSSGSSRNVKK
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaggcacttgggctctcggacagtacattgaaagccctc
aaaaagaaagggtttgaagaaccaaccccgattcaggaaaaagtcatcccactttttttg
aaaggagaatctgacattatagggcaggctcagacagggacaggaaaaacaacagctttc
ggagctcccattatagataaaataccagagaaatcaggacacgttcaggcaataatcctg
actcctacaagggaactcgcaatccaggtttcagaagaacttaactccataaagggagat
aaaaaactgaatattgttcctatatatgggggacagtccatgacccagcagcttcgcatg
ctgaaaatcggggtggacattgttgtggggacaccgggaagggtcatcgaccacattgaa
agaaagagtttaaaactcgaacatatctcttatttcgtacttgacgaagccgatgaaatg
ctgaacatgggctttattgacgatataaaggagatcttaaaggcaacaggccctgataaa
aggatgctgttcttctcagccacaatgccaaaggcaatccttggaatcgtcaagaagtac
atgcagaactacgagcatgttacaattgagaaggaggagcttacagcaaacctgaccgaa
cagatctactttgaggttcatgaaaacgacaagtttgaagccctcagcagaatcatcgac
atcgaagacgaattctacgggcttgttttctgccggacaaagaccgacaccagccagctt
gcccagaaactcagtgataggggttatttagccgatgcccttaatggagacctctcccag
caggagcgggaaaaaatcctaaataagttcaggaaacagaagataaacatcctcgcagca
actgatgttgcagcaagaggaatcgatatcatgaatctgacccatgtcattaactattcc
ctgcctcaggaccctgagtcctatgtgcacagaatagggaggacaggaagggcaggcaag
cagggaactgctatcacctttgtgacatcctcggagtttaggcggcttacttacataaag
aagacttcaaagtccgaaatgaagaaaggccgcattcccgagataaaagatgtaataaaa
gccaaaaggacgagagtaaaagccgaactagaagataccataaagaccgaagaatacggc
gactgccttgagatgagtgaaaagctccttgaggaataccccgcagaaaagatcttggct
gcccttttaaagtacgctttcaaggaaaaattcgacgagagcatgtacacggagatttca
ggcggcagttcctatgtcgacaggaaaggcaaaaccaggctatttatagccatgggaaag
gtcgacggcatgactccggaaaaactggcatatttcattcaggaggaactcggggacagt
gaactgaaagtaagggatgcagaaattttcccacacttttccttcgtatccattcccttt
gcccaggctgaagccctgctcgaaatcttcaaaaacaagagaaggggaagtaaacccttc
gtggaacttgcccagaaatcccggagaggaagttcaaacggttcaaacgctaggaacagt
agcggaagcttaagaagtggtggatactcaagaagtggtggaagctcaagaagtggtgga
ggctcaagaagcagtggaagctcaagaagcagtggaagctcaagaagcagtggaagctca
agaagcagtggaagctcaagaaatgtgaaaaaataa
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