Methanosarcina sp. WWM596: MSWHS_2603
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Entry
MSWHS_2603 CDS
T03852
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
meq
Methanosarcina sp. WWM596
Pathway
meq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSWHS_2603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meq03019
]
MSWHS_2603
03016 Transfer RNA biogenesis [BR:
meq03016
]
MSWHS_2603
Enzymes [BR:
meq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MSWHS_2603
Messenger RNA biogenesis [BR:
meq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSWHS_2603
Transfer RNA biogenesis [BR:
meq03016
]
Prokaryotic type
tRNA degradation factors
MSWHS_2603
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
dsrm
DND1_DSRM
DUF2496
Motif
Other DBs
NCBI-ProteinID:
AKB19466
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All DBs
Position
3165002..3166777
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AA seq
591 aa
AA seq
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MLDMLRGITIDDATTRDMDDAIWVEITENRGWHVVVMIADVAKTVPPYSELDRLAMSRVE
TRYYAKGNSPMLPRRLADEKLSLWPGESKYVLAVDIILGEDLSILETRLSWTGMTSEARL
AFSDIPRILSDQEHPQHTLIKLASQLAKGLLTQRRNCGALAFYDLNRGLVTSEEGSLRQL
RHRDDTIGYVIIQELMILANMTVAEYAVINDIPILFRNHTARNATPERVDLLKLLESTAV
VPEINIAAIRHTTYMMFNRAEYSSAILGHFGLNLGMYTHFTSPIRRYADLVNHRQIRAHI
RNEPLPYSKEEIQAIASHVNLARLENDRSKSEYMKEKAYRKAESTIQRNRIEDASDSDFE
RITKFLIRKGEDCPEAYYDAFRKRLGNLPIICAGLVLLQAPDGERWTELKRTLLEEMATV
PHKATSIFDIAQHIAGWQMPVFEVDETTRGNLPVFTARSTIRVDNEKYQSAAYEDLTKKG
AVQRTYVDLLAVILGLPAPDLKIKIADPPASKEKMTINTSKDPIFALQEYCQAKKLPLPA
YSFKTDGPTNKPIFTCTCTFGSLTSTEKAGNKKRAKRLAARAMIYTLVPEN
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgctggatatgctcagaggcattacgatcgatgatgcgacaacccgggacatggatgat
gcaatctgggtggaaatcacggaaaaccgtggatggcacgtcgtggtcatgatcgcggat
gttgcaaagactgttcccccgtattcagagcttgatcgacttgcgatgtctcgggttgag
accaggtattatgcaaaaggtaacagcccaatgttgccccggcggctcgcagacgagaag
ctttccctgtggccgggagagtcgaagtatgtccttgccgtggatattattcttggcgag
gacctatcgatccttgaaacaaggctttcgtggactgggatgaccagtgaagcccgactc
gcattttctgacatcccccgcattctctctgatcaagagcacccgcagcatactctcatc
aaactagcaagccagctcgcgaaaggtcttttgacgcagcgtcgcaactgtggagcactg
gcattctacgacttgaatcgagggctggtgacgagtgaagaagggtcgctgcggcagctg
agacatagggatgataccattggttatgttatcatccaggagctgatgattctagctaac
atgaccgtagcagagtatgcggtcataaatgacattcctatccttttccgtaaccataca
gccaggaacgctacccctgagcgggtggacttgttgaagctgcttgaaagcacggctgtc
gtccctgaaataaacatagctgctatcaggcataccacgtacatgatgttcaacagagcg
gaatacagctctgccatcctgggccattttggactgaacctcggaatgtatacccacttt
acatcgcccatccgaaggtatgctgatctcgtgaaccaccggcagatccgggcacatatc
cggaatgaacctttgccctattctaaagaggagattcaggcaattgcatcgcacgtcaac
ctggcacgcctcgaaaacgacaggtctaaaagtgagtacatgaaggaaaaggcgtataga
aaagctgagtcgaccattcagaggaatcggatcgaggatgcaagcgattcagactttgaa
cgcatcaccaaatttcttatccgcaaaggggaggattgccctgaggcttattacgatgct
ttccggaaacgccttggaaatctgcctatcatctgcgcagggctggtactcctgcaggct
cctgatggtgaaagatggaccgaacttaaaagaacattgctggaggaaatggcaactgtt
cctcacaaggcaacttcgatcttcgacattgcacaacatatagcaggctggcagatgccc
gtattcgaagtggatgaaactacccggggcaacctgccggtattcactgcccggagcacc
atcagagtagataacgaaaagtaccagtctgccgcatacgaggacttgacaaagaaaggt
gctgttcagcggacatacgtagacctgctagcagttattctaggcttacccgctccagac
ttgaagatcaaaatagcagatccacctgccagtaaggaaaaaatgacgattaacacatca
aaagacccgatttttgccctgcaggagtattgtcaggcaaagaaactccccttgccagct
tattcgtttaagacagatggccctaccaataagccaattttcacctgcacctgcaccttt
ggctccttgaccagcaccgaaaaggcgggaaacaagaaaagggcaaaacggctagctgcc
agggcgatgatctacactttagtgcccgaaaattga
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