Methanosarcina sp. WWM596: MSWHS_2628
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Entry
MSWHS_2628 CDS
T03852
Name
(GenBank) Eukaryotic peptide chain release factor subunit 1
KO
K03265
peptide chain release factor subunit 1
Organism
meq
Methanosarcina sp. WWM596
Pathway
meq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
meq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MSWHS_2628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meq03019
]
MSWHS_2628
03012 Translation factors [BR:
meq03012
]
MSWHS_2628
Messenger RNA biogenesis [BR:
meq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
MSWHS_2628
Translation factors [BR:
meq03012
]
Eukaryotic type
Release factors
MSWHS_2628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_2
eRF1_3
eRF1_1
baeRF_family10
acVLRF1
SLX1_C
HMBD
HypA
Med10
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AKB19491
UniProt:
A0A0E3L3B7
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Position
complement(3203704..3204951)
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AA seq
415 aa
AA seq
DB search
MGEYCTYEKYVFKKKLETLRNKSGRGTELISLYIPPDKQISDVTDHLREEHKQASNIQPE
LASKNLQGALDSLLAKLKFLNKVPENGIVYLTGTVDTGANRTGMVNEVLIPPDLVVRYIY
HCDSVFYLEPLEEMLRECSTYGLILLDLREATIGMLVGKQIEVIRHLHSTVPGKQRKGGQ
SAHRFEQLRRIAIHDFYKRIGDAASAAFLELEPAELKGILIGGHSPTKEEFSEGEFLHYE
LQKKVLGLFDTGYTDESGFSELINAAEDTLQGIDLFKQKKDMEIFFKEIATESGKVSYGE
DNVRANLEIKAVDVLLLSEDLRSERVTIKCSICGYEKKRTRKRKPNEAVPVAGNCPECGS
ALEATDVIDIVSELSELADKGDARITFISTDFDEGSQFMIAFGGIAAILRYSTGV
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaatactgtacatatgaaaaatatgtatttaaaaagaagcttgaaactctaaga
aataaaagtggaaggggcacagaattaatttccctttatattcctcctgataaacagatt
tcagatgttacagatcatttgagagaagaacataaacaggcttcgaacattcagcctgaa
cttgccagcaagaacttacagggagcacttgattctttgctggcaaagttaaaatttctt
aacaaagtaccggaaaatgggatagtttatttaacaggaactgtcgataccggagctaac
aggacaggcatggtgaacgaagttcttattcctccggaccttgttgtgcgttatatatat
cactgtgattccgttttttatcttgagcctcttgaggaaatgcttagagagtgcagtact
tatgggcttatacttcttgatttaagagaagctactatcggaatgcttgtaggtaaacaa
attgaagttatcaggcatctccactctacggtccccggcaaacaaagaaaaggaggccag
agcgcgcatcgttttgaacaactcagacgcattgctattcatgatttctacaaaagaata
ggggatgctgcaagtgcggcattccttgaattagagccagctgaacttaaaggcattctt
ataggagggcattctccgactaaagaagagttcagtgaaggtgaatttctacattatgag
cttcagaaaaaggttctcggattgtttgatacggggtatacggatgaatcgggtttttct
gagttaataaatgcagcagaggatacactccagggtattgacttatttaaacaaaagaaa
gatatggaaatattttttaaagagatcgctactgagtctggtaaagtatcctatggagaa
gacaatgtgcgggcaaatcttgaaataaaggcagttgatgttcttttactttcagaagac
ctgagatctgaaagagtgactatcaaatgcagcatttgcggatatgagaaaaaacggaca
aggaaacggaaacccaatgaagctgttcctgtggcaggaaattgtccagaatgtggttct
gcacttgaagccacggatgttattgatatcgttagtgaattatcagaactcgccgataaa
ggcgatgcaaggattacttttatatcaacagatttcgacgaaggctctcaatttatgata
gcttttggtggaattgctgcaatcctcagatatagtacaggggtgtaa
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