Metamycoplasma equirhinis: JPM7_5400
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Entry
JPM7_5400 CDS
T09202
Symbol
polC
Name
(GenBank) DNA polymerase III PolC-type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
meqr
Metamycoplasma equirhinis
Pathway
meqr03030
DNA replication
meqr03430
Mismatch repair
meqr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
meqr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JPM7_5400 (polC)
03430 Mismatch repair
JPM7_5400 (polC)
03440 Homologous recombination
JPM7_5400 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meqr03032
]
JPM7_5400 (polC)
03400 DNA repair and recombination proteins [BR:
meqr03400
]
JPM7_5400 (polC)
Enzymes [BR:
meqr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JPM7_5400 (polC)
DNA replication proteins [BR:
meqr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JPM7_5400 (polC)
DNA repair and recombination proteins [BR:
meqr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JPM7_5400 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
DNA_pol3_finger
PHP
HHH_6
DNA_pol3_a_NI
tRNA_anti-codon
DUF655
HHH_3
RNase_H_2
DNA_pol_A_exo1
DNA_pol3_a_NII
NYD-SP28
Motif
Other DBs
NCBI-ProteinID:
BDX52933
LinkDB
All DBs
Position
complement(649463..653776)
Genome browser
AA seq
1437 aa
AA seq
DB search
MRKVDETFVKLCKEINFAPNAEFDGTRIINVEINRKGIWNFHISFDKHISLKNYRDFKAA
LNAKFPKSNISISIENILRDKKIVSDYLTYVIQTKFSQINDLRMFINEEDIELAENEIYF
SLPSKTIYDEFTNSHETLKNALETIGFGFYTIHFKYHDKRPKKMDETRIKKLANKFNELK
SVEKENSKKLPNTNWTNSYRKEKVKPIDMSIEMLHDTYEEILVTTKGEIYFLEAKTLKNN
KVLYTLKISDYSEAIQVKKFYNEDDVLPDLKIGDAIYVTGRLTEDAFTKVKCIMAIGRDW
FTITEGYLKLNEDKEETKRIELALRTNMSAQDGISKPVDYLNAAKFYGHEAIAITDLDDV
QGFSSFYVDSKQFKNIKPIYGATISTINSANEFFYGFKDFELKNERYVVFDLETTGLSPR
FAEIIEFGATIIESGKITENIQFFIKASKPLSHFTKELTNITDEMLSNGEAQEAGIKRIY
EILKNSVCVAHNANFDINFCKEKFINLGLDTTKIVGIDTLAISHFLDPLERRHSLGYLSK
RFNVPYDSVVAHRGDYDAEVLCKVWLKIISRLEREHNVKTSTELAKLWSKEMLARKHSYE
TRVIAKNQKGIKKLFKLVSTVLTDQYAEGAQLYFEQIKKDPDLFFGSSTHESYLWEQVFN
GSSENILKAIQMFDYIELPPISTFEYLVKNEEITWDNLVFAYKDLIQKATSLGKLCVAVS
DARYVYDFQKLIHDVYINAPTLGGGIHWLKKKSLHPKFKYLNTTEMKAEFKFLNDVDLIK
QIVVDNPKKISDQIEANIQIIKDNLHVPEFDNSPQKLREIVYENLEKIYGKNPEKTIVER
IEKELNPIIKYGYSVIYWISHKLIKKSNEDGYIVGSRGSVGSSIVAYLANISEVNPLDPH
YLCHNCKYFEWNEDKSIFSGWDLPSKNCPKCKTLLNTDGHSIPFETFLGFEANKVPDIDL
NFSGEYQPIIHNYVKELFGESHTFRAGTISTVASKTAYGFCKKYDEEKRVGEKPWSNQYL
DFLATKTMDVKRTTGQHAGGVIIIPKEFDVEDFTPINYPANDTSGSWKTTHLDYRAIHDS
VLKLDLLGHDDPTVFKMIEEYTNTDIHDIPKFDENVMKLFYTTESMNITPEDLNGETTGA
FGLPEFGTNFVRGMLKTSQPRTFNDLILLSGLSHGTNVWAGNAEELVKQGLKLKDCVCCR
DDIMLDLIKHNVDSLKAFEIMEKVRKGKGLTEEQEKLLIDHNIPEWYINSLKKIKYMFPK
AHATAYVISAWRIAWYKMYYPLEFYAAYFSTKREYIDIKIMSSGHSIVNSRLRELKTRLE
SKDSKLTDKEISTIPILEIANEMYARGYKIKSVDLKLSNSSKWIIAKNEKAIIPPFNVVE
GLGDTVAETIIEARNENEFISIEDLKERTKVNTKIESELRELGVLNNLDETNQTNLF
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaggttgatgaaacttttgttaaattatgtaaggagataaattttgctccaaac
gcggaatttgatggtactagaataattaatgtcgaaattaatcgcaaaggaatatgaaat
tttcatatttcttttgacaaacacattagtctaaaaaattaccgcgattttaaagctgca
cttaacgccaaattccccaaatcaaatatatctatatcaattgagaatatactgcgtgat
aaaaaaatagtttctgattatttaacttatgttattcaaaccaaattttcacagataaac
gatttacgaatgtttataaatgaagaagatattgaattagctgaaaatgaaatatatttt
tcgctaccctcaaaaacaatatatgatgaatttacgaattcacatgaaactttaaaaaat
gcccttgaaacaatcgggtttggcttttatacaattcattttaaatatcatgacaaaaga
cctaaaaaaatggatgagactagaatcaaaaaattagcaaacaaatttaatgaactgaaa
tcagttgaaaaagaaaatagtaaaaaattaccaaatactaattgaacaaattcatatcgt
aaagaaaaagttaagccgattgatatgagcattgaaatgttgcatgatacatatgaagaa
attttggttacgacaaaaggtgaaatatattttctagaagctaaaacattaaaaaataat
aaggttttatatacattaaaaatttctgattatagcgaggctattcaagttaaaaaattc
tataacgaagatgatgtgctgccagacttaaaaattggcgatgcaatatatgttactggt
agactaaccgaagacgccttcactaaggtaaagtgcataatggcaataggaagagattga
tttacaatcactgaaggctatttaaaattaaacgaagataaagaagaaacaaaaagaatt
gaacttgcgcttagaactaatatgagtgcacaagatggaatttctaagccagttgattat
cttaatgctgcaaaattttatgggcacgaggcaatcgcaataactgatcttgatgatgtg
caaggattttcatctttttatgttgattctaaacaatttaaaaatattaaacctatatat
ggcgctacaatttcaactattaattcagcaaacgaatttttttatgggtttaaagacttt
gaattaaaaaatgaacgatatgttgtatttgacttggaaacaactggtttgagtcctaga
tttgctgaaattattgaatttggagcaactattattgagtctggaaaaattactgagaat
attcaattttttataaaagcttcaaaaccactttcacattttacaaaagaactaacaaac
ataactgatgaaatgttgtctaatggtgaagcacaagaagccggaatcaaaagaatttat
gaaattttaaaaaatagcgtatgtgttgcccataacgcaaatttcgacattaatttttgt
aaagaaaaatttatcaatttagggcttgatacaacaaaaatagtgggaattgacacatta
gcgatttctcattttcttgatccactagaaagacgtcatagtttgggatacctctcaaaa
agattcaatgttccatatgatagcgtagttgctcaccgtggggattatgatgctgaagtt
ttatgtaaagtgtgattaaaaataattagtagactggaacgcgaacataatgttaaaact
tcaaccgaacttgctaaactttgaagtaaagaaatgcttgcaagaaagcatagttatgaa
acaagagtaatagctaagaatcaaaaaggtattaaaaaacttttcaaattagtatcaact
gttttaactgaccaatacgccgagggcgcacaactttattttgaacaaataaagaaagat
cctgacttattttttggttcttcaacgcatgaatcttacttatgagagcaagtgtttaat
ggctcgagtgaaaatattttaaaagcaattcaaatgtttgattatattgaattaccacca
atatctacatttgaatatctagtaaagaatgaggaaataacgtgagataatctagttttt
gcgtataaagatttaatacaaaaagccacttcgttaggcaaactatgtgtagcggtttct
gacgcaagatatgtttatgattttcaaaaattgattcatgatgtatacattaatgctcca
acacttggtggcgggattcattggcttaagaaaaaaagtttacaccctaaatttaaatat
ttaaatactaccgaaatgaaggcggaatttaaattcttaaatgatgttgatttaattaaa
caaattgttgtagacaatcctaaaaaaatttccgatcaaattgaagcaaatattcagatt
ataaaagacaatttacatgttccagaatttgataattcgccccaaaaattacgcgaaata
gtttatgaaaatctagaaaaaatttatggcaaaaacccagaaaaaactatagtagaacgt
attgaaaaagaacttaatccaattataaaatacggatattcagttatttattgaataagc
cataaattaattaaaaaaagcaatgaagatggatatattgtaggtagccgtggaagcgtt
ggaagttcaattgttgcttatttagcgaatatttcagaagttaatcctttagatcctcat
tatttatgccataattgcaaatattttgaatgaaatgaagataaatcaattttttcaggt
tgagacttaccaagtaaaaattgtcctaaatgtaagacacttttgaatacggatggccac
agtataccgtttgaaacatttttaggttttgaagccaataaggtgccagatattgatttg
aattttagtggtgaataccaaccaattattcataattatgtaaaagaattattcggcgaa
agtcatacatttagagcaggaacaatttcgactgtagcctcgaaaacagcatatggtttt
tgtaaaaaatatgatgaagaaaaacgtgttggtgaaaaaccttgaagtaatcaatattta
gattttttggcaacgaaaactatggatgttaaacgtactacaggtcaacacgctggcgga
gtaattattattccaaaagagttcgatgtcgaagattttacaccaataaattatccagcc
aatgatactagcggaagttgaaaaactacacatcttgattatcgcgcaattcacgacagt
gtattaaaattagacttattaggacatgatgatccaactgtgtttaaaatgattgaggaa
tatactaataccgatatacatgacattcctaaatttgatgaaaatgtaatgaaattattt
tacactactgaatcaatgaatattactcccgaagatttaaatggtgagacaacaggagca
tttggcttgccggaattcggcaccaatttcgttagaggaatgttaaaaacatcacaaccc
cgcacatttaatgatttaattttactttctggcttaagtcatggaacaaatgtttgagct
ggaaatgcagaggaactagtaaaacaaggtctcaaattaaaagattgtgtttgctgtcgc
gatgatattatgcttgatttaattaaacataatgttgattcattaaaagcttttgagatt
atggaaaaagttagaaaaggtaaaggtttaactgaagaacaagaaaaacttttgattgat
cataatattccagaatgatatattaactcacttaaaaaaattaaatatatgtttccaaag
gcacacgcaactgcatatgttatttccgcgtgaagaattgcttgatacaaaatgtattat
ccacttgaattttatgcggcatatttttcaacaaaacgtgaatatatcgatattaaaata
atgagtagcggacattcaatagttaactcacgtttacgtgaattaaaaactcgtttggaa
agtaaagattctaaattgaccgataaagaaatttctactataccaattttagaaattgca
aatgaaatgtatgcacgtggctataaaataaaaagtgttgatttaaaattgtcaaattca
agcaagtgaattattgccaaaaacgaaaaggcaataattcctccatttaacgttgttgaa
ggattgggtgataccgttgctgaaacaattattgaagcacggaatgaaaacgaatttatt
tcaattgaagatttaaaagaacgcacgaaagtaaatacaaaaattgaatctgaattgcgt
gaattaggtgttttaaataatttagatgaaactaatcaaacgaatttgttctaa
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