Macrococcus equipercicus: KFV11_11075
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Entry
KFV11_11075 CDS
T08514
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mequ
Macrococcus equipercicus
Pathway
mequ03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mequ00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KFV11_11075 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mequ03400
]
KFV11_11075 (mfd)
Enzymes [BR:
mequ01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KFV11_11075 (mfd)
DNA repair and recombination proteins [BR:
mequ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KFV11_11075 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
Glyco_hydro_115
RecG_dom3_C
MFD_D3
UB2H
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
UTH13733
UniProt:
A0A9Q9BVI5
LinkDB
All DBs
Position
complement(2069543..2073046)
Genome browser
AA seq
1167 aa
AA seq
DB search
MKDIITRILRQDERFNELSSIFGRKNLLITGLNPSAKAVMMAEQYLAEDRQMMVVTSNLY
QAEKLEADLSRLVPEDELFKYPVQDIMIEEYSTKSPELMSERIRTLSHLATGRPGLFIVP
VSGLKKLITPKALFGSHIVSLTLGHDIELDVLQQQLVDMGYVRRNRVTTVGEFSVRGGLV
DIFPMIGKPVRMELFDTEIDALRYFDADSQRSEENIEQVEITAASEFIFNAAQIASIQEG
LGRALAATEKKLSKEAAETLHETYDSLMMHTTELLDHNILRRAIKFAYPEETAIVDYLAD
DAIIVVDEYNRVKETELSVAREIEEFQTSLIESGRGFIGQRFMKEEAFNQLLNRYKTSFF
TLFTATMPVAIEELVKFSCKPVQQFYGQYDLMFSEFDRFRKQGYTMVVLASNPTRKKKIQ
DMLVDMQLPVAVDRIVNEPGIALITEGDLSEGFELPYMKLAVITERELFKLRKEKPRRTQ
KKMSNAEKIKSYQELNIGDYIVHVHHGVGRYLGVETLLVNNIHKDYIKIQYKGTDQLFVP
VDQMSYVQKFVGSEEKEPKLNKLGGTEWKKTKARVQQSVNDIADELLKLYQERERVQGYQ
FGPDTEEQDSFEMDFPYEPTEDQKRSLEEIKEDMEKPKPMDRLLCGDVGYGKTEVAVRAA
FKAVMDGKQVAFLVPTTILAQQHYETFIERIQDFPVEVQMMSRFKTAKEIKQTKEGLKSG
FVDIVIGTHKLLSKDVVYKDLGLLIVDEEQRFGVTHKEKIKALKTNVDVLTLTATPIPRT
LHMSLLGVRDLSVIETPPENRFPVQTYVLEYQQNFIKEAMDRELARNGQVFYLYNRVQTI
YQKAEQLEMMMPSARIAVAHGQMAERELEETMLGFINGEYDVLVTTTIIETGVDVPNANT
LIIEDADRFGLSQLYQLRGRVGRSNRISYAYFLHAPNKVLTEVAEQRLQAIKEFTELGSG
FKIAMRDLNIRGAGNLLGRQQHGFIDAVGYDLYTEMLQQAVNEKRGIETKEEAPDIEIDV
QVDAYIPAEYVREEQAKIEFYKKLRLVQSEQELLDVQDELTDRYGDYPVEVERLLNIVKI
KVNALAFGIVNIKETAKDIEIFVSEASTAKVDGVQLFKDTETFGRDLKVSVAGNRMKLAL
KKRGSWLQSLVQLTNIMQGSLKLDEEQ
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
ttgaaggatataataactagaattttacgacaggacgaacgattcaatgaactgagtagt
atattcggccgtaagaacttgctgattaccggcttgaatccttctgccaaggcggtcatg
atggctgagcagtatttagctgaagaccggcagatgatggttgtgaccagtaatttgtat
caggcagaaaaactggaagcagacctttcccggctggttccggaagatgaactgtttaag
tatcccgtccaggacattatgatagaggaatactctacaaagagtcctgagttgatgagt
gaacgaataagaacgttatcccacctcgcaaccgggcgacctgggctttttatcgtaccg
gtcagcggactgaagaaattgatcacaccgaaagcattgttcggctcccatatcgtgtca
ttaacgctaggacacgatattgagcttgatgtactgcagcagcagcttgttgacatgggt
tatgtcagacgtaaccgcgttacgacagtcggtgagttttctgtgcgtgggggactggtc
gatatttttcccatgatcggtaaacctgtccgtatggaactgtttgatacggaaattgat
gcgctgcgctactttgatgcggacagtcagcgttctgaagagaacatagagcaggtagag
attacggctgccagtgaattcatctttaatgccgcacaaattgccagcatacaggaagga
ctgggcagagcgctcgctgccacagagaaaaaactctcaaaggaagcggcagaaacactg
catgaaacgtatgactcgctcatgatgcatacgacagagctcttagatcataatattctg
cgccgtgccattaagttcgcttatccggaagagacagcgattgtcgattatttagcagac
gacgccattattgttgtcgatgaatataaccgggtgaaagagacagagctgtcggtcgca
cgagaaatcgaagaattccagacatcgctcattgaatccggccgcggatttatcggtcag
cgctttatgaaggaagaggcgttcaatcaactgctgaaccgttataagacgtcatttttc
acgctgtttacggcgacaatgccggttgctatcgaagagctggtaaaattctcatgcaaa
ccggtgcagcagttctacggtcagtatgacttgatgttctctgaatttgaccggttccgt
aagcagggctatacaatggtcgtcctggcatcaaatccgacccggaagaagaaaattcag
gacatgcttgttgacatgcagctgcctgtcgcagtcgaccgaatcgtcaatgaaccgggt
atcgctttaattacagaaggcgacttatctgaaggttttgaactgccttatatgaaactc
gcggtcataacagagcgggaactgtttaaactgcgtaaagagaaaccgagacggacgcag
aaaaaaatgtccaacgccgagaaaatcaagtcttatcaggagctgaacatcggcgattat
atcgtccatgtgcatcacggggtcgggcgttatctcggcgtggagacattactcgtcaac
aatattcataaggattacatcaagattcagtataaagggaccgatcagctgtttgttcca
gtggaccagatgtcctacgtccagaagttcgtcggttctgaggagaaggagccgaagctg
aacaagctcggcggcacagaatggaagaagacaaaagcgcgggtgcagcagagcgtcaat
gatattgcagatgaactgctgaaattatatcaagagcgtgaacgtgttcaaggttaccag
tttggaccggacacagaagagcaggacagctttgaaatggactttccgtatgagccgaca
gaagaccagaagcgttcgcttgaagagattaaagaggatatggaaaaaccaaaaccgatg
gaccggctgttatgcggggatgtcggttacggtaagacagaagtagccgtccgtgctgca
ttcaaggccgtcatggatggcaagcaggtcgcctttcttgtgccgacgacgattcttgcg
cagcagcattacgagacattcattgaacgaattcaggattttccggttgaagtgcagatg
atgagccgcttcaaaacagcgaaagaaatcaagcagacaaaagaaggactgaaatccggc
tttgttgatattgttatcggtacgcacaaactgctcagtaaagatgttgtctataaagac
ttaggattattaatcgtcgatgaagaacagcgtttcggcgttacccataaagagaaaatc
aaagcgctcaagacaaatgtcgatgtattgacgttgacggcaacacctatcccgcggacg
ctgcatatgagtctgcttggtgtgcgtgacttgtcagtcatcgaaacgccgccggaaaac
cgtttcccggtgcagacgtatgtgcttgagtatcagcagaacttcatcaaggaagcgatg
gaccgtgaacttgcacgtaacggtcaagtgttctatttgtacaaccgtgtgcagacgatc
tatcagaaagcggagcagctggaaatgatgatgccatctgcccgtattgctgtcgctcac
ggccagatggcagagcgggaacttgaagagacgatgctcggctttattaacggagaatac
gatgtactggtgacgacgacgattattgagactggagttgatgtgccgaacgctaataca
ctgatcatagaagatgcggaccgcttcggactcagtcagctgtatcagctgcgcggacgc
gtcggccgaagcaatagaatcagctatgcttattttctccatgcaccgaacaaagtgctg
acagaagttgctgaacagcggctgcaggccattaaagaattcacggagctcggctccggc
ttcaagattgcgatgcgcgacttgaatatccgtggtgccggtaatttgctcggccggcag
cagcacggcttcatcgatgcagtcggctatgacttatatacagaaatgctgcagcaggca
gtcaacgaaaaacgcggcatcgaaacgaaggaagaagcaccggacattgaaatcgatgtg
caggtggatgcctatattcctgctgaatatgtccgggaggaacaggcgaagattgagttc
tacaagaaactccgtctcgttcagtctgaacaggagctgctggacgttcaggatgaactg
acagatcgttacggcgattatccggttgaagtagaacgtctgcttaatattgtgaagatt
aaagtcaatgccctcgcttttggaatagtcaacattaaggagaccgcaaaagacatcgaa
atattcgtatcagaagcatcgactgcgaaagtcgacggggtacagctcttcaaagataca
gagacattcggccgtgacttgaaagtcagcgtcgccggcaaccgtatgaagctcgcgctg
aaaaaacgaggcagctggctgcagtcactcgtgcagctgacaaatattatgcaaggaagt
ttaaagcttgatgaagaacaatga
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