Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1: MMINT_02170
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Entry
MMINT_02170 CDS
T02692
Name
(GenBank) RNA-binding protein, containing S1 domain
KO
K07573
exosome complex component CSL4
Organism
mer
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1
Pathway
mer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMINT_02170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mer03019
]
MMINT_02170
Messenger RNA biogenesis [BR:
mer03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MMINT_02170
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MMINT_02170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
S1
Zn_ribbon_TiaS
OB_RRP5_4th
S1_RRP5
HypA
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
AGN25619
UniProt:
R9T530
LinkDB
All DBs
Position
complement(236321..236875)
Genome browser
AA seq
184 aa
AA seq
DB search
MSKFVLPGDEVAVVEEYIPAEGTYEHEGIIRASVAGKLSLNDNDMTATVKPVNEPNILKP
GDNVFCRITDVRASMAVCEIIASDGNDRDITGDKSATIHVSKLSSEYVQDVGNEYRPGDV
IRAKVLQVKPSVQLSTQEPHYGAIKALCRKCRKPMEADGKVLKCKACERTETRTIADDYG
CVEF
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatttgttttacctggtgatgaagtcgcagttgttgaagagtacatacccgca
gaaggtacatatgagcacgaagggattatccgtgccagtgtagcaggtaagctttctctc
aatgataacgatatgactgccaccgtaaagccagtaaatgaacctaatattctgaagcct
ggagataatgtattctgcaggataactgatgtaagggcaagcatggcagtgtgtgaaatc
attgcatcggacggcaatgacagggatatcaccggagacaagtccgctacaattcatgta
tctaagctgtcatctgaatacgttcaggatgtgggaaatgaataccgcccaggggacgta
atcagagctaaagtactgcaagtaaaaccttctgtgcagctctccacacaagaaccgcac
tatggcgcaattaaagccctctgcaggaaatgcaggaagccgatggaagcagacggcaag
gtcttgaaatgcaaagcctgtgaaaggacagagacccgcaccatagccgatgattatggc
tgcgtagagttttaa
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