Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1: MMINT_04750
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Entry
MMINT_04750 CDS
T02692
Name
(GenBank) exosome complex RNA-binding protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
mer
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1
Pathway
mer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMINT_04750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mer03019
]
MMINT_04750
Messenger RNA biogenesis [BR:
mer03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MMINT_04750
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MMINT_04750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AGN25857
UniProt:
R9T4J8
LinkDB
All DBs
Position
complement(468458..469228)
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AA seq
256 aa
AA seq
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MSEGIAEIKREYINKLLQVGRRVDGREANEYREIQIETNCIESAQGSARVKLGKTEVLAG
IKMDVGTPFPDTPDRGVLTTNTELIPMASPDFEAGPPDAGAIELARVVDRGIRESEMIDL
QKLCIAEGEEVWINFLDIYVLDYDGNLFDACFLAAAAALSTTIVPAAEREKGEDYPLPIK
HLPIQTTAVKIENSILFDPTLDEEKVADARLTVTTDENGDIRAMQKGLSGAFTLEEVKQV
IDSSLCISKELRKLIG
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagggattgcagaaataaaaagagaatatatcaacaagcttcttcaagtcggg
cgcagagttgacggtagagaagcaaacgagtacagagaaattcagattgaaaccaactgc
atagagagtgcacagggatcagcaagagtgaagcttggaaagaccgaagtacttgctgga
atcaaaatggatgtaggaactcctttcccagatacaccagaccgcggagtccttaccacc
aatacagagcttataccaatggcttctcctgattttgaagccggaccgccagatgcagga
gctattgaattagcacgtgtagttgaccgcggcataagagaaagcgagatgattgatctt
caaaagctgtgcattgcagaaggtgaagaagtctggatcaatttcctggacatatacgtc
cttgattatgatggaaacttatttgatgcgtgtttcttagccgccgcagctgccctgtct
acaacaattgtcccggctgcagaacgcgaaaaaggcgaggattatccgctgccgattaag
catctgccgattcagactacagctgtgaaaatagaaaactctatattgtttgacccaact
ctcgacgaagaaaaggtcgcagatgcacgccttacagtcaccacagatgagaacggcgac
ataagggctatgcagaaaggtctttctggtgcattcacgctagaagaagttaagcaagtg
atcgattcatctctttgcataagcaaagaactcagaaaactcattgggtga
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