Mesorhizobium erdmanii: EB233_12410
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Entry
EB233_12410 CDS
T06791
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
merd
Mesorhizobium erdmanii
Pathway
merd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
merd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EB233_12410 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
merd03021
]
EB233_12410 (rpoD)
Transcription machinery [BR:
merd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EB233_12410 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF3106
DUF4351
Motif
Other DBs
NCBI-ProteinID:
QKC76240
UniProt:
A0A6M7UJA2
LinkDB
All DBs
Position
2534802..2536826
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AA seq
674 aa
AA seq
DB search
MATKEKEEVETEREGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQ
IEDTMAMLSDMGINVVEDDEQGEEAEAGDTAADAEEDANELAEQTGTAVAATTTKKEPTD
RTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELN
ESKILLREIIDLEATYAGPEAKQAPVVERIEEAPKAEEKPRRGRDDEDDITNVGADTRGI
GDDDEEDEDEASLSLAAMEAELRPQVMETLDVIADTYKKLRKLQDQQVENRLAAAGTLSP
SQDRRLKELKDQLIKAVKSLSLNTARIEALVEQLYDINKRLVQNEGKLLRLAESYGVRRE
EFLKEYQGSELDPNWTRSIANLTSRGWKEFTKNEKDAIKDLRAEIQHLATETAISILEFR
KIVNQVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPT
PEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKMAILPIDAAIQAN
LRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK
HPSRSRKLRSFLDS
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggcgactaaggaaaaggaagaggtcgagaccgaacgcgaaggcgccaccgatggccct
ctgctcgacctttccgatgatgctgtcaagaagatgatcaaggccgccaagaagcgcggc
tatgtcaccatggacgagctgaattcggtgctgccttccgaggaagtgacctccgagcag
atcgaggacacgatggcgatgctgtccgacatgggcatcaacgtcgtcgaggatgacgag
caaggcgaagaggccgaggccggcgacaccgcggcggatgccgaggaagacgccaacgaa
ctggccgaacagaccggcacggcggtcgccgccaccaccaccaagaaagagccgaccgac
cgtaccgacgatccggtgcgtatgtacctgcgcgagatgggctcggtcgagcttctgtcg
cgcgagggcgaaatcgccatcgccaagcgcatcgaggccggccgcgagacgatgatcgcg
ggcctgtgcgaaagcccgctgaccttccaggccatcatcatctggcgcgacgagctcaac
gaatccaagatcctgttgcgcgagatcatcgatctcgaagccacctatgccggtcccgag
gccaagcaggcgccggtggtcgagcgcatcgaggaagcgcccaaggccgaggaaaagccg
cgccgcggacgcgacgatgaagacgacatcaccaatgtcggcgccgatacgcgcggcatc
ggggacgatgacgaggaagacgaagacgaggccagcctgtctctggcggcgatggaagcg
gaactgcgtccccaggtgatggagacgctcgacgtcatcgccgacacctacaagaagctg
cgcaagctgcaggaccagcaggtcgagaaccgcctggccgccgccggcacgctgtcgccc
agccaggaccgccggctgaaggagctgaaggaccagctgatcaaggcggtgaagtcgctg
tcgctcaacacggcgcgcatcgaggcgctggtcgagcagctctacgacatcaacaagcgc
ctggtgcagaacgagggcaagctcttgcgcctcgccgaaagctatggcgtgcggcgtgag
gagttcctgaaggagtatcagggttccgagctcgaccccaactggacgcgctcgatcgcc
aatctgacctcgcgcggctggaaggaattcaccaagaacgagaaggacgcgatcaaggac
ctgcgcgccgagatccagcacctggccaccgaaacggcgatctcgatcctggaattcaga
aagatcgtcaaccaggtgcagaaaggcgagcgcgaagccgcgatcgccaagaaggaaatg
gtcgaggccaatctgcgcctggtcatctcgatcgccaagaaatacaccaatcgcggcctg
cagttcctcgacctgatccaggaaggcaatatcggcctgatgaaggcggtcgacaaattc
gaataccgtcgcggctacaagttctcgacctacgcgacatggtggatccggcaggcgatc
acgcgttcgatcgccgaccaggcgcgcaccatccgcatcccggtgcacatgatcgagacg
atcaacaagatcgtgcgcacctcgcgccagatgctgcacgagatcggccgcgagccgacg
ccggaagaactggccgaaaagctcgccatgccgctcgaaaaagtgcgcaaggtgttgaag
atcgccaaggagccgatctcgctcgaaacgcctgtgggtgacgaggaggattcgcatctg
ggcgatttcatcgaggacaagatggcgatcctgccgatcgatgcggcgatccaggccaat
ctgcgcgagaccaccacgcgcgttctggcctcgctgacaccgcgcgaggagcgtgtgctg
cgcatgcgcttcggcatcggcatgaacaccgaccacacgctggaagaagtcggccagcag
ttctcggtcacccgcgagcgtatccgccagatcgaagccaaggcgctgcgcaagctcaag
cacccgagccgctcgcgcaagctgcgcagcttcctcgacagctga
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