KEGG   Mesorhizobium erdmanii: EB233_13925
Entry
EB233_13925       CDS       T06791                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
merd  Mesorhizobium erdmanii
Pathway
merd03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:merd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EB233_13925 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:merd03400]
    EB233_13925 (ligD)
Enzymes [BR:merd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EB233_13925 (ligD)
DNA repair and recombination proteins [BR:merd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EB233_13925 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S AA_synth
Other DBs
NCBI-ProteinID: QKC76486
UniProt: A0A6M7UI94
LinkDB
Position
2818179..2820668
AA seq 829 aa
MTTPPKLKSYRAKREFTKTPEPAGGLVTGDGNRFVVHKHHATADHYDLRLQVGDVLKSWA
VPRGPSLDPADKRLAVETEDHPLEYIDFEGVIPEGEYGGGPMIVWDTGTWAPMDDVDKSL
RTGAFKFRLAGGKLNGGWMLTRLKPKPGEDENKKNWLLFKERDLAADTVLNILEARPESV
KSGLRIEELAAAAKPVAKPAPKPGSLKPGTLPGAVKAPALSRIEPQLATQVPKPPDGADT
RETWLHEIKFDGYRTMAHLSDGQVRLITRGGIDWTKRYGDLPHAFAKLPCREAIIDGEIV
VLDGRGISRFALLQDALAEGAGSKLHFYAFDLLHLDGWDLTKAPLIARKALLAELLGGLG
ANSAIQYSDHVEGSGQGLYDQASELGLEGVVSKRASAIYQSGRTKSWTKCKALQKDDFVI
AGYTISQAAEGLAALGMAEWQDGELHYRGKVGTGFDRDTAEDLLARLEPLTSGATPPEGV
PREIMREMHWVKPLFSARIHYANRTADNSLRHGVFRGLRDVGLSTPVSAKRKRLISEADL
ATIWVTNPGRRLFGRTGPTKLDIAVYYALVGDFMLPHILGRPVSLVRCPTGLPKDCFFQR
HAFTGMPPSVVTFEATNSEGETKSYLSVEGAKGYLALAQFGVVEFHTWGTHRTNLDRPDQ
IVFDLDPGEGISWREVVEAAVHIRGELEGLGLVPFAKTSGGSGIHITVPVTTKQNWKKLH
QATSAISTHLAATAPDIFTTTMGKENRKKRIFIDYHRNARGHTSAAPYSLRARTNLPAST
PVSWNDLETIDAPQDLNYSSLPGLLETSGDPWADIDEAARDLPVIGGAR
NT seq 2490 nt   +upstreamnt  +downstreamnt
atgaccacccctcccaaactcaaatcgtatcgcgccaagcgcgagttcaccaaaacgccg
gagccggcgggcggccttgttaccggagacggcaaccgcttcgtcgtgcacaagcaccat
gccaccgcggaccactacgatctgcgcctgcaggttggcgatgtgctgaaaagctgggcg
gtgccgcgcgggccttcgctcgacccggccgacaagaggctggcggtcgagaccgaggac
catccgctcgaatatatcgacttcgaaggcgtcattcccgagggcgaatatggcggcggg
ccgatgatcgtctgggacaccggcacctgggcgccgatggacgatgtcgacaaaagcctt
cgcaccggggcgttcaagtttcgcctcgccggcggcaagctcaatggcggctggatgctg
acccgcctgaagcccaagcccggcgaggacgagaacaagaagaactggctgctgttcaag
gagcgcgatctcgccgccgacacagtgctgaatatcctcgaagcgcggccggaaagcgtg
aaatccggcctgcgcatcgaggaactggcggcggctgcgaaaccggtcgcgaagcccgcg
ccaaagccgggttccttgaaacccggcacgctgccgggcgcggtgaaggcgccggcgctt
agccgcatcgagccgcagctggcgacgcaggtgccaaagccgcccgatggcgcggacacg
cgcgagacatggctgcacgagatcaaattcgacggctaccgcaccatggcgcatctgagc
gacgggcaggtgcggctgatcacccgtggcggcatcgactggacgaagcgctatggcgac
ctcccgcatgcgtttgcaaaactgccgtgccgcgaggcgatcatcgacggcgagatcgtc
gtgctcgatggccggggcatttcccgcttcgcgctgttgcaggatgcgctggccgagggc
gccggcagcaagctgcatttctatgccttcgatctcctgcatctcgacggctgggatttg
acgaaggcgccactcatcgcgcgcaaggcgctgctggcggagctgcttggcggtctcggc
gccaactccgccatccagtactccgatcatgtcgaaggctccgggcaggggctctatgac
caggccagtgaactcgggctggaaggcgtcgtctccaagcgcgccagcgcgatctaccag
agcggccgcaccaagagctggaccaagtgcaaggcgctgcagaaggacgatttcgtcatc
gccggttacacgatctcgcaagcggcggaaggcttggccgcgcttggcatggccgagtgg
caggacggcgaactgcactatcgcggcaaggtcggcaccggattcgaccgcgacacggcc
gaggacctgcttgcccggctggagccgttgacatcgggcgcgacgccacccgaaggagtg
ccgcgcgaaatcatgcgcgagatgcactgggtgaagccgctgttttcggcgcgcatccac
tatgccaaccgcaccgccgacaattcgctgcgccatggcgtgtttcgcggtctccgggat
gtcgggctgtcgacgccggtctcggccaagcgcaagcggctgatctcggaagcggacctt
gccaccatctgggtgaccaatcccgggcggcgactgttcggcaggaccggcccgaccaag
ctcgacatcgccgtctactacgcgctggtcggcgatttcatgctgccgcacattctcggc
cgcccggtgtcgctggtgcgctgcccgaccggcctgcccaaggactgcttcttccagcgc
cacgccttcaccggaatgccaccttcggtcgtgacgttcgaggccaccaactcagaaggc
gagaccaaatcctacctctcggtcgagggagcaaaaggttatctggcgctggcacagttc
ggcgtcgtcgagttccacacctggggcacgcatcgcaccaacctcgacagaccggaccag
atcgtcttcgacctcgacccgggcgaggggatttcctggcgcgaagtggtcgaggccgcc
gtgcacatcaggggcgagctcgaggggctggggctggtacccttcgccaagacgtcaggc
ggcagcggcatccacatcaccgtgccggtgacgacgaagcagaactggaagaagctgcac
caggcgaccagcgccatctccacccatctggcggcgaccgcgcccgacattttcaccacc
accatgggcaaggagaaccgcaagaagcgcatcttcatcgactatcaccgcaacgcgcgc
ggccacacctcggcggcgccctattcgctgcgcgcccgcaccaacctgccggcctcgacg
ccggtgagctggaacgatctggagacgatcgatgcgccacaggacctgaattattcgtcg
ttgccgggcttgctggagacatcgggtgatccctgggcggatatcgacgaggcagcccgg
gatttgccggtgattggcggcgcgcggtag

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