Mesorhizobium erdmanii: EB233_18635
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Entry
EB233_18635 CDS
T06791
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
merd
Mesorhizobium erdmanii
Pathway
merd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
merd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EB233_18635 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
merd03400
]
EB233_18635 (mfd)
Enzymes [BR:
merd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EB233_18635 (mfd)
DNA repair and recombination proteins [BR:
merd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EB233_18635 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QKC77265
UniProt:
A0A6M7UJD4
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All DBs
Position
3783994..3787491
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AA seq
1165 aa
AA seq
DB search
MSLVPTIGLPKGRAGQFIVDGVADGYEAFALVQAALEIAPDKPVLFVARDGQRLPAIVEG
LAFAAPDLPVLELPAWDCLPYDRVSPGSDAAAKRLDALTAMIALAKKPHRAVILTTANAL
LQRIPPADLVEAQTFHARPGNQIDMNALIARLETSGFERVPTVRGIGEFAVRGGILDLFA
PGWTEALRLDFFGDTLESIRVFDAATQRTTGQRKSMALQAMSEVALTPETISRFRRSYIE
AFGAPQRDDGLYAAVSEGRRFAGMEHWLPFFYERLETVFDYLPDTPVVFDHLAHEALAER
HTLILDHYEARRKQADAALKDAVPYKPVAPDLLYLSPENLIASLGPREAIDFTPFDAPDA
GAKKVYHAGSRHGRSFVEERADPNVNVFDVVVRHIADERAARRRVVIAGWTEGSLDRLGQ
ILAEHHLGNLKQVETLAEAEKLEPGQAALAVLPLESGFETEKLVVVAEQDILGDRLIRRS
KRKKRASDFIAEASALSAGDIVVHADHGIGRFIGLRTIEAVGAPHDCLEIHYAGDDRLFL
PVENIELLSRYGSDTAEATLDKLGGGAWQSRKAKLKRRLLDMAGQLIRIAAERQMRAAPA
LVPAEGLYDEFAARFPYEETDDQQTAIDSVRDDLGAGKPMDRLICGDVGFGKTEVALRAA
FIAAMEGFQVAVVVPTTLLSRQHFKTFSQRFSGLPIRVAQASRLVGAKELAETKKALAEG
QVDIVVGTHALLGSSISFKNLGLLIIDEEQHFGVKHKERLKDLKTDVHVLTLSATPIPRT
LQLALTGVRELSLIATPPVDRMAVRTFISPFDPLVIRETLLRERYRGGHSFYVVPRISDL
AEIHDFLKESVPELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANT
LIIHRADMFGLSQLYQLRGRVGRSKVRAYALFTLPANRKLTDTAERRLKVLQSLDTLGAG
FQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKDSGEVLDGGWSPQIA
VGTAVMIPESYVPDLQLRLALYRRLGDLENTEEIDAFGAELIDRFGSLPDEVKHLLKIVF
IKALCRKANVEKLDAGPKGVVIHFRKREFPNPVGLVKFIGEQGALAKIRPDHSVVFTRDW
PTAEKRLAGSAVVMTQLARLVEKAA
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgagccttgttcccaccataggtctgccgaaaggccgtgccggccagtttatcgtcgac
ggggttgccgacggctacgaagccttcgcgctggtgcaggccgcactcgaaatcgcgccc
gacaagccggtgctgttcgtggcgcgagacggccagcgcctgccggcaatcgtcgaggga
ttggccttcgccgcaccagacctaccggtgttggaactgccggcctgggattgcctgccc
tacgatcgcgtttcgcccggttcggacgccgcggccaagcgtctcgacgcgctcaccgcc
atgatcgcgctggcgaagaaaccgcatcgcgccgtcatcctcaccaccgccaatgcactg
ctgcagcgcattccaccggccgatcttgtcgaagcgcagacgtttcacgccaggcccggc
aaccagatcgacatgaatgcgctgatcgcgcgactggaaacatcaggcttcgagcgcgtg
ccgacggtgcgcggcatcggcgagttcgccgtgcgaggcggcattctcgacctgttcgcc
ccgggctggaccgaggcgctgaggctcgatttcttcggtgatacgctggaatcgatccgc
gtcttcgacgccgccacccagcgcaccaccggacagcgcaaatcgatggcgctgcaggcg
atgagcgaagtggcgctgacaccagaaaccataagccgcttccgccgctcctatatcgaa
gcctttggcgcgccgcagcgcgatgacgggctttacgcggcggtcagcgagggcaggcgc
ttcgccggcatggagcactggctgccgttcttctacgagcggctggagacggtgttcgat
tatctgccggatacgccggttgttttcgaccatctggcgcatgaggcgctggctgaacgc
catacgctgatcctcgaccactacgaggcgcgccggaagcaggccgacgccgcgctgaag
gatgcggtgccctacaagccggtggcgccggatctgctttacctgtcgccggaaaacctg
attgcctcgctcgggccgcgcgaagcgatcgacttcacgccgttcgacgcgccggatgcc
ggtgcgaaaaaggtctaccacgccggctcgcgacatggccgcagcttcgtcgaggaacgc
gccgatcccaacgtgaatgtcttcgacgtcgtcgtcaggcacatcgccgacgaacgcgcg
gcgcgccgccgcgtcgtcatcgccggctggaccgaaggctcgctcgaccggctcggccag
atcctcgccgagcatcatctgggcaatctcaagcaggtcgaaacgcttgccgaggccgaa
aagctcgagccggggcaggcggcgcttgccgttctgccgctcgaatccggcttcgagacc
gaaaagctggtcgtcgtcgccgaacaggacattctgggcgaccggttgatccggcgctcg
aagcgcaagaagcgcgcatctgacttcattgccgaggcctcggccttgtcggccggcgat
atcgtcgtccatgccgaccacggcatcggccgcttcatcggtttgcgcaccatcgaagcg
gtcggtgcgccgcatgactgcctggaaatccactatgccggcgacgaccggctgttcctg
ccagtggaaaacatcgagcttctgtcacgctacggctctgacacagccgaggcgacgctg
gacaagctcggcggcggcgcctggcagtcacgcaaggcaaagctgaagcggcgcctgctc
gatatggccgggcagctgatccgcatcgccgccgaacgccagatgcgcgccgcgccggcg
ctggtgccggccgaaggcctgtacgacgaatttgccgcgcgtttcccctatgaggaaaca
gacgaccagcagacggcgatcgactcggtccgggacgacctcggcgccggcaagccgatg
gaccggctcatctgcggcgatgtcggtttcggcaagaccgaagtggcgttgcgcgccgcc
ttcatcgcagccatggaaggcttccaggtcgccgtggtggtgccgacgacgctgttgtcg
cgccagcatttcaagacgttttcgcagcgcttttccggccttcccatccgtgttgcccag
gcctcgcggctggtcggtgccaaggaactggcggagacgaagaaggctctggccgaaggc
caggtcgacatcgtcgtcggcacccatgcgctgctcggatcgtcgatctcgttcaagaac
ctcggcctgctgatcatcgacgaggagcagcactttggcgtcaagcacaaggagcggctg
aaggacctgaagactgacgtccatgtgctgacgctgtcggcgacgccgatcccgcgcacg
ctgcaactggcgctgacgggcgtgcgcgaactgtcgctgatcgccacgccgccggtcgac
cgcatggcggtgcgcaccttcatctcgccgttcgatccgctggtcatccgcgagacgctg
ctgcgcgaacgctaccgtggcggccattccttctatgtcgtgccacgcatcagcgatctc
gccgaaatccatgatttcctgaaagaatccgtccccgaactgaaagttgcggtggcccat
ggccagatgccgccgggcgaactcgacgacataatgaatgccttctatgacggccagtac
gacgtgcttctgtcgacgaccatcgtggaatccggtctcgacatcccgaccgccaacacg
ctgatcatccaccgcgccgacatgttcggcctgtcgcagctctaccagctgcgtggtcgc
gtcggccgttccaaggtgcgcgcttatgcgctgttcacgctgccggcgaaccgcaagctg
accgacaccgcagagcgccggctgaaggtgctgcagtcgctcgacacgctgggcgccggc
ttccagctcgccagccatgatctggacatcaggggcgccggcaatcttctgggcgaggag
cagtccggccatatcaaggaggtcggtttcgagctctaccagcagatgctggaggaggcc
gttgccgaggtgaaggattccggcgaggtgctggatggcggctggtcgccgcagatcgcc
gtcggcacggcggtgatgatcccggaaagctatgtgcccgacctgcagctcaggctggcg
ctctaccgccgtctcggcgatctcgaaaacaccgaggagatcgacgctttcggcgccgag
ctgatcgatcgcttcggctcgctcccggacgaggtgaagcatctgttgaagatcgtcttc
atcaaggcgctttgccgcaaggccaatgtcgagaagctcgatgccgggccgaagggcgtc
gtcatccatttccgcaagcgtgagttccccaacccggtcgggctggtcaagttcatcggc
gaacagggggcgttggccaagatccggccggatcacagcgtcgtcttcacccgtgactgg
ccgacggccgagaagcggctggcaggttctgccgtggtcatgacgcagttggcgcggttg
gtggagaaggcggcgtag
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