Mesorhizobium erdmanii: EB233_20245
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Entry
EB233_20245 CDS
T06791
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
merd
Mesorhizobium erdmanii
Pathway
merd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
merd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EB233_20245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
merd03019
]
EB233_20245
Enzymes [BR:
merd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EB233_20245
Messenger RNA biogenesis [BR:
merd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EB233_20245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QKC77545
UniProt:
A0A6M7UKA6
LinkDB
All DBs
Position
complement(4108048..4109472)
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AA seq
474 aa
AA seq
DB search
MTNENTLPGNVTAELSGFAALGITGALLKATHNAGFTEPKPIQMQAIPPQLEGRDIFGIA
QTGSGKTAAFALPILSKIIALGTKRRAKTTRALILAPTRELAVQIEDTIKILAKGAHVST
ALVLGGVSRFSQVKKVAPGVDILIATPGRLTDLVREGDLILSDTKWLVLDEGDRMLDMGF
INDVKRIAKATAPDRQTALFSATMPDEIAELAKGLLKNPVRIEVSPQSTAAAEIVQGVVF
ARTKQKRQVLSTMLADAAMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQK
ALNDFRDGSVRILVATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAI
TLCDPSENSKLRQVERIIRTKLPIVADHLGSPDPQRNPAEKNERFEPANDRNDRNGRRDG
RRPGGEKKPNNGFGKKRFGDKPAFAGERKPEGAKPFKGNNKRRFGAKRPAARAA
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaacgaaaacactttgcccggcaacgtcaccgcggaactctccggtttcgcggcg
ctgggaattaccggtgcgctgctcaaggccacccacaatgccggcttcaccgaaccgaag
ccgatccagatgcaggccataccgccgcagctggaaggccgtgacattttcggcatcgcg
cagaccggctccggcaagaccgcggccttcgcgctgccgatcctgtcgaagatcatcgcg
ctcggcaccaagcggcgcgccaagacgacccgcgcgctcatcctggcgccgacccgcgag
ctcgccgtgcagatcgaggacaccatcaagatcctcgccaagggcgctcacgtctcgacg
gcgctcgtgctgggcggcgtctcccgctttagccaggtgaagaaggttgctcccggcgtc
gacatcctcattgccacgcccggccggttgaccgatctggtgcgcgagggcgacctcatc
ctctccgacaccaaatggctggtgctggacgagggcgaccgcatgctcgacatgggcttc
atcaacgacgtcaagcggatcgccaaggcgaccgcgcctgaccgccagacggcgctgttt
tcggccaccatgccggacgagatcgccgaactggccaagggcctgctaaagaaccccgtc
cgcatcgaagtctcgccgcaaagcactgctgcggccgagatcgtgcagggcgtcgtcttc
gcccgcaccaagcagaagcgccaggttttgtcgaccatgctcgccgacgcggcgatgaag
tccgtcatcatcttttcgcgcaccaagcatggtgccgaccgggtgaccaaggacctcgag
cgcgacggcttcaaggccgccgtcattcatggcaacaagtcgcagaacgcacgtcagaag
gcgctcaacgatttccgtgacggttcggtgcgcattctggtcgcgaccgacatcgcggcg
cgcggcatcgacgtccccggcatcagccatgtcgtgaatttcgacctgccggacgaagcc
gaaagctatgtccaccgtattggccgtaccggccgcaacggcatggacggtattgcgatc
acgctttgcgatccttcggaaaacagcaagctgcgccaggtcgagcgcatcatccgcacc
aagctgccgatcgttgccgaccatctcggcagccccgatccgcagcgcaatccggccgaa
aagaacgagcgcttcgagcccgccaacgaccggaacgaccgcaatggtcgtcgcgacggc
aggcggccgggcggtgagaagaagccgaacaacggtttcggcaagaagcgtttcggtgac
aagccggcctttgccggtgaacgcaagccggaaggcgcgaaacccttcaagggcaacaac
aagcgacgcttcggcgccaagcgtccggcggcccgcgctgcttaa
DBGET
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