Mesorhizobium erdmanii: EB233_20780
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Entry
EB233_20780 CDS
T06791
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
merd
Mesorhizobium erdmanii
Pathway
merd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
merd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EB233_20780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
merd03019
]
EB233_20780
03009 Ribosome biogenesis [BR:
merd03009
]
EB233_20780
Enzymes [BR:
merd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EB233_20780
Messenger RNA biogenesis [BR:
merd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EB233_20780
Ribosome biogenesis [BR:
merd03009
]
Prokaryotic type
rRNA processing factors
EB233_20780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QKC77634
UniProt:
A0A6M7UKF7
LinkDB
All DBs
Position
4208636..4211587
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AA seq
983 aa
AA seq
DB search
MPNKMLIDASHPEETRVVVVRGNRIEEFDFESQDKKQLKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLRAEAQEAEDEEDEDGDGEDRQSRDRGRRGR
RRGGKSRDRGEHKRDAGEAGEGSGEPSEGDDSGDIVVEEISHTSEIIEHAADTSEHSDRS
GHADTSGHDEGSGEQDETETREGGPTSIAAAVEGDVISEPVAETEQGAEATSGDNDRGML
EEVQSSHPDDHEVESVGAEDALEEVRNRRKPVRRQYKIQEVIKRRQILLVQVVKEERGNK
GAALTTYLSLAGRYSVLMPNTARGGGISRKITSAVDRKRLKEVVADLEVPQGMGVILRTA
GESRTKAEIKRDYEYLMRLWENVRNLTLQSTAPALVYEEGSLIKRSVRDLYNKDIDEILV
SGEEGYREAKDFMRMLMPSHAKVVQPFRDTTPIFVRNGIEAQLDRMLQPQVTLKSGGYII
INQTEALVAIDVNSGRSTKEHSIEDTALHTNLEAAEEVARQLRLRDLAGLIVIDFIDMEE
NRNNRSVEKRLKDHLKNDRARIQVGRISHFGLMEMSRQRIRASVLESTMKPCPHCGGTGH
VRSDSSVALMVVRAIEEFLLKDSRSHITVRTPAATALYVLNHKRGTLVELESRFGLTITI
EADDAVGSQHYAIFRGALAEKPEGFVEARSLPAYVEADEPEDEIVVVEDDDEAPAQAEQP
RQQPQQNQQPRAAGSEDGEGRDRKRRKRRRRRGGRDRDREHGSPTDGSSISAPPGDFAGS
ADAGDDDDTETDDAAPIAASASDEAVQASDDSQGKKRRRGKRGGKRNRREDGEGETEANA
GEATEASEADASESEPASIEPVAVAAAEEPVAAVSEEVPSPEKPKKPRRAAKPKKAAAEA
VAETTAVEAAAETPVEAPVAVAEETVAAAAVEAPAKARPSRRKPAAIDAPVVPVVSSTVA
NEPEAKAEEKPKRGGWWQRKGFF
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaaaatgctgatagacgcctcccacccggaggaaacacgagttgtcgtcgta
cgcggtaaccgtatcgaagaattcgactttgaatcccaggacaagaagcagctcaaagga
aatatctacctcgcccgcgtaacgcgcgtcgaaccctcccttcaggcagcctttgtcgaa
tatggcggcaaccgtcacggttttctcgccttcagtgaaatacaccccgactattaccag
attccggtcgccgaccgtcaggcactgctgcgcgccgaagcgcaggaggccgaagacgaa
gaggacgaggatggcgacggcgaagaccgccagagccgcgatcgcggacggcgcggccgc
cggcgcggcggcaagagccgcgaccgcggtgagcacaagcgcgatgccggcgaggcaggc
gaaggctccggcgagccaagcgaaggcgacgacagtggcgacatcgttgtcgaggagatt
tcccacacctccgagatcatcgaacatgcagccgatacatcggaacattcagatcgctcg
gggcatgccgatacctcaggccatgatgaaggttccggcgagcaggacgaaaccgaaacc
cgcgagggtggcccgacatcgattgccgccgctgtcgaaggcgatgtgatttccgagccc
gtcgctgagacagaacaaggcgctgaagcaacgtccggcgacaatgatcgcggcatgctg
gaggaagtacagtcctcgcatccggatgatcacgaagtcgaatcggtcggtgccgaggat
gcgctcgaggaagtgcgcaaccgccgcaagccggtgcgccgccagtacaagatccaggaa
gtgatcaagcgccggcagatcctgcttgtgcaggtcgtcaaggaagagcgcgggaacaag
ggcgccgcactcaccacctacctgtcgcttgccggccgctattcggtgctgatgccgaac
acggcgcgcggcggcggcatttcgcgcaagatcaccagcgcggtcgaccgcaagcgactc
aaggaggtggttgccgatctcgaagtgccgcaaggcatgggcgtcatcctgcgcaccgcc
ggcgaaagccgcaccaaggccgagatcaagcgcgactatgaatatctgatgcggctgtgg
gagaacgtgcgcaatctcacgctccagtccaccgcccctgccctcgtctatgaggaaggc
agcctcatcaagcgctcggtgcgcgacctctacaacaaggacatcgacgagattcttgtc
tccggcgaggaaggctatcgcgaggcaaaggacttcatgcgcatgctgatgccgagccac
gccaaggtggttcagccgttccgcgacacgacaccgatcttcgtgcgcaacggcatcgag
gcgcagctcgaccgcatgctacagccgcaggtgacgctgaagagcggcggctacatcatc
atcaaccagaccgaagcgctggtcgccatcgacgtcaattcgggccgctccaccaaggag
cactcgatcgaggacacggcgctccacaccaatctggaagcggccgaagaagttgcccgt
cagctcaggctgcgcgatctggccggcctgatcgtcatcgacttcatcgacatggaggag
aatcgcaacaaccgctccgtcgaaaagcggctgaaggatcacctcaagaacgaccgtgcg
cgcatccaggtcggccgcatttcgcatttcggcctgatggagatgtcgcgccagcgcatc
cgcgccagcgtgctggaatcgaccatgaagccctgtccgcattgcggcggcaccggccat
gtgcgctccgattcgtcggtcgcgctgatggtggtgcgggcgatcgaggaattcctgctc
aaggattcgcgcagccacatcactgtgcgcacgcccgcggcgaccgcgctctacgtgctc
aaccacaagcgcggcacgctggtggaactggaaagccgcttcggcctgaccatcaccatc
gaggccgatgatgcggttggctcgcagcactatgcgatcttccgtggcgctttggccgaa
aagcccgagggcttcgtcgaggcgcgcagcctgccggcctatgtcgaggctgacgagccc
gaggacgagatcgtcgtcgtcgaggacgatgacgaggcaccggcgcaggctgagcagcca
cgccagcagccgcagcagaaccagcagccgcgggctgccggcagcgaggacggcgaaggc
cgcgaccgcaagcgtcgcaagcgtcgcaggcgtcgcggcggtcgtgatcgcgaccgcgag
catggctcgcctacggatggttcatccatctccgctcctccaggcgatttcgccggatcg
gcggacgcgggggacgacgacgacaccgaaacggacgacgccgctccgatcgctgccagc
gcctccgacgaggcggtgcaggcttctgatgacagccagggcaaaaagcgccgtcgcggc
aagcgcggcggcaagcgcaaccgccgtgaagacggcgaaggcgagaccgaggcaaacgcc
ggcgaagcaaccgaggcttcagaggctgatgcttccgaaagcgagcctgcttcgatcgag
ccggtggcggttgccgcggccgaagagccggtggcagcggtgagcgaagaggtgccgagc
cccgagaagcccaagaagccgcgtcgcgcggcaaagccgaagaaggcggccgccgaggcc
gtcgccgaaacgactgctgtcgaagcggccgcggaaacgccggtcgaggcgccggtggcg
gttgccgaggaaacggtggcggctgccgcggtggaagcgcctgcgaaggcgcggccgtcg
cgacgcaagccggctgcgatcgatgcaccggtcgtgccggtggtttcctcgaccgtagcc
aatgaaccggaagccaaggcggaagaaaagccgaagcgcggcggctggtggcagcggaag
ggctttttctag
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