Chelativorans sp. BNC1: Meso_3935
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Entry
Meso_3935 CDS
T00374
Name
(GenBank) 3' exoribonuclease
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mes
Chelativorans sp. BNC1
Pathway
mes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Meso_3935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mes03019
]
Meso_3935
03016 Transfer RNA biogenesis [BR:
mes03016
]
Meso_3935
Enzymes [BR:
mes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Meso_3935
Messenger RNA biogenesis [BR:
mes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Meso_3935
Transfer RNA biogenesis [BR:
mes03016
]
Prokaryotic type
tRNA degradation factors
Meso_3935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
ABG65302
UniProt:
Q11BC3
LinkDB
All DBs
Position
4238007..4240154
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AA seq
715 aa
AA seq
DB search
MFNHHKVEIEWGGRPLILETGKIARQADGAVLATYGETVVLATVVSAKEPKPGIDFFPLT
VNYQEKTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGYKNDTQVIITVLQH
DLENDPDILSMVAASAALTLSGVPFMGPVGAARVGYVGGEYILNPHLDEMAETKLDLVVA
GTSDAVLMVESEAHELPEDVMLGAVMFGHRNFQPVIDAIIKLAEVAAKEPREFLPEDLSA
LEAEMLKVVEADLRDAYKITNKQARYDAVNAAKAKVKEAFLPEGAEAYKWTPEQVATVFK
ALQAKIVRWNILDTGSRIDGRDLRSVRPIVAEVGVLPRTHGSAVFTRGETQALVVATLGT
GEDEQYVDSLTGTVKETFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPAP
EQFPYTIRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVL
SDILGDEDHLGDMDFKVAGTAEGVTSLQMDIKITGITEEIMKVALEQAKDGRLHILGEMA
NALSESRGELGEFAPRIEVMHIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDDGTVKIA
SSNGKEIEAARKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAPER
VQKTTDVVKEGDKVFVKLMGFDERGKVRLSMKVVDQETGKEIVQEKKEEKQEAEG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatcatcataaagtggaaattgaatggggtgggcggccgctcatcctggaaacg
ggcaagatcgcccgccaggccgacggtgcggttctcgcgacctacggcgaaactgtcgtg
ctggccaccgtcgtctcggccaaggagccgaaacccgggatcgatttcttcccgctcacc
gtgaattatcaggaaaagaccttcgcggccggcaagatccctggcggttatttcaagcgt
gaggggcgtccgagcgagaaggagacgctggtctcccgcctcatcgatcgtccgatccgt
ccgctcttcgtcgaaggctacaaaaacgacacccaggtgatcatcaccgttctccagcac
gacctggagaacgatccggacatcctgtccatggttgccgcttcggccgcgctgacgctt
tcgggtgttcccttcatggggccggtaggggctgctcgcgttggctatgtcggcggcgag
tacattcttaacccgcacctcgacgaaatggcggagaccaagctggacctcgtcgtggcg
ggcactagcgatgcggtgctgatggtggagtcggaagctcacgagctgcccgaggacgtg
atgctcggcgccgtgatgttcgggcacaggaatttccagccggtcatcgacgccattatc
aagctcgccgaagtcgcggcgaaagagccccgcgaattcctgcctgaggatctttccgcg
cttgaggccgagatgctgaaggtggtcgaggctgacctgcgtgacgcgtacaagatcacc
aacaagcaagctcgctacgatgccgtgaatgctgccaaggcaaaggtgaaggaagctttc
cttccggaaggtgccgaggcatacaagtggacgcctgagcaggtggccacggtcttcaag
gcgctccaggcaaagatcgtgcgctggaacatcctcgacaccggctcccgtattgacggc
cgcgatttgaggagcgttcgcccgatcgtcgcggaagtgggcgtactgccccgtacgcac
ggctctgccgtcttcacccgcggggagacgcaggcccttgtggtcgcgaccttgggtacc
ggcgaggacgagcaatatgtcgattccctgacaggtaccgtcaaggaaaccttcatgctg
cactacaacttcccgccctattcggtgggtgagaccggccgcatgggctctccgggtcgg
cgtgagatcggccacggcaagctcgcctggcgcgcggtgcacccgctgctcccggcaccg
gagcagttcccctacacgatccgcgttgtgtccgagatcaccgagtcgaacggctcttcc
tcaatggccactgtctgcggcacctcgctggctctgatggacgcgggagtgccgcttgcc
aagccggtggctggcatcgcgatgggcctcatcaaggaagacgaccgctttgccgtgttg
tccgacattctcggtgacgaggatcatcttggcgatatggacttcaaagtggcaggcacc
gccgaaggcgtcacctcgctgcagatggacatcaagatcaccggcatcaccgaagagatc
atgaaagtcgccctggagcaggcaaaggatggccgtttgcatattctgggcgaaatggcc
aacgcgctctcggaaagccgcggcgagcttggtgagttcgctccgcgcatcgaggtcatg
cacatcccgaccgacaagatccgtgacgtgatcggcactggcgggaaggtgatccgcgag
atcgttgagaagaccggcgccaagatcaatatcgaggacgacggcacggtgaagatcgcc
tccagcaatggcaaggagatcgaggcggctcgcaagtggattcattccattgtcgccgaa
ccggaggtgggagagatctatgagggcacggtcgtaaagacagccgatttcggcgcattc
gtgaacttcttcggtcctcgggatggcctggtccacatttcgcaactggcgcccgagcgc
gtccagaagaccacggatgtggtgaaggaaggcgacaaggtcttcgtcaagctcatggga
tttgacgagcgcgggaaggtgcgcctttccatgaaggtcgtcgatcaggagaccggtaag
gaaatcgtacaggagaagaaggaagagaagcaggaagccgaaggctga
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