Methanogenium sp. S4BF: L1S32_03570
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Entry
L1S32_03570 CDS
T09590
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
mesb
Methanogenium sp. S4BF
Pathway
mesb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mesb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L1S32_03570 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mesb03400
]
L1S32_03570 (uvrB)
DNA repair and recombination proteins [BR:
mesb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L1S32_03570 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L1S32_03570 (uvrB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
P-loop_SecA
AAA_22
UB2H
AAA_25
DUF3566
Motif
Other DBs
NCBI-ProteinID:
WFN35210
LinkDB
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Position
complement(732267..734201)
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AA seq
644 aa
AA seq
DB search
MTRFNLKSDFSPQGSQPDAIKSLVESIGHKNRFQTLMGVTGSGKTFTIANVIAAVQKPTL
VLAHNKTLAAQLYNEFRDFFPENRVEYFVSYYDYYQPESYIPQRDIYIEKDAAINPKIEQ
MRLAATASLLSRDDVIVIASVSAIYGLGNPENFEGLGFEVAQGERVKRNDILSRLIEIQY
ERNDIELQPGRFRVKGDTIDLIPGYGPDIIRIEFFGDEIERITEIDKITHTQKQVLPYFF
IYPARHYVIPEEEKAGAIIEIQKELEATLPTLGLIEAHRLRQRTLYDIEMIEETGYCKGI
ENYSRFFDHRQKGEKPFCLLDYFPDDFLMVIDESHQTLPQVRGMYNGDFSRKKSLVEYGF
RLPSAFDNRPLKFPEFEDYMRTAIFVSATPGPYEKEHSSAIIEQIIRPTGLVDPEVSIRP
LKTQIPDVCEEIQKTIAAGDRVLITTLTKKLAEELSEYLAEKGIKTRYLHSEINAIERTE
ILRELRLGIFDVLVGINLLREGLDIPEVSFIGILDADKEGFLRDARSLIQTIGRAARNDH
SHVVLYADKITDSIKTAVEETGRRRAMQMEYNRVHGISPVTIHKPIREKEVDIQDTKHIP
RYELPNLIIQVETEMQEAAERLDFERAIVLRDKLKKLNAEVQKG
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaccaggtttaatctgaaatctgacttttctccccagggctcacaacctgatgcgatc
aaatcccttgtagagagcattggtcataaaaaccggtttcagacgttaatgggcgtaacc
ggttcggggaagacatttaccattgcaaatgtgattgccgcagtgcagaagccgaccctt
gtccttgcccacaataaaacactcgcggcacagttgtataacgaattcagggactttttc
ccggagaaccgggtcgaatatttcgtctcctattatgattactatcagccggagtcctac
attccccaaagagacatctatatcgaaaaggacgccgcaatcaacccaaagattgagcag
atgcgtcttgcggcgaccgcatctctactctcacgtgatgatgttattgtcatcgcatct
gtctccgccatctacggtctgggaaacccggagaattttgaagggcttggatttgaggtg
gcgcagggagaacgggtgaaacgcaatgacatcctctcccgcctgattgagatccagtat
gaacgcaatgatattgaactccagccggggcggttccgggtgaagggggacaccattgat
ctgatccccggatatggcccggacatcatcaggattgagttttttggcgatgaaattgag
agaattaccgagattgacaaaatcactcatacgcagaagcaggtgctcccatattttttc
atctaccccgcccgccattatgtgataccggaagaggagaaggccggggcaataatcgag
atacagaaagagctggaagcgactcttcctacactgggccttattgaagcacatcggctc
cgccagcggacgctctatgacatcgagatgattgaggagaccggctactgcaaagggatt
gaaaactattcccggttctttgatcatcggcaaaagggagagaaaccattctgcctgctg
gattatttccccgatgactttctgatggtaatagatgagagtcaccagacgctcccgcag
gtgcgggggatgtacaacggcgacttttcgcggaagaaatcccttgttgagtatggattc
cggctcccgtccgcctttgacaaccgcccgctgaaattccctgaatttgaagactacatg
aggacggcgatattcgtatccgcgacccccggcccctatgaaaaagagcattcctcagcg
atcattgaacagatcatccgtccgaccgggctggttgatcctgaagtcagtatccggccg
ctcaaaacccagattcctgacgtatgcgaagaaattcagaagaccatcgcggcaggggac
cgggtactcataacgaccctgaccaaaaaactggcagaagaactctcggaatacctcgca
gaaaagggaataaagacccgctatctccattcagagataaatgccatcgaacgaaccgag
atcctccgtgaactccgcctgggaatctttgatgtgctcgtcggcattaatctcctcagg
gaagggcttgatattccggaagtgagtttcatcggcattctggatgcggataaggaaggc
tttctcagggatgcccgaagcctcatccagaccatcgggcgggcggcacgaaatgaccac
tcccatgtcgtcctctatgccgacaaaatcaccgattcgataaaaaccgccgttgaagag
accggcaggaggcgtgcgatgcagatggagtataaccgggtgcatggcatcagcccggtc
accattcacaaacccatccgggagaaagaggtggacattcaggataccaaacatattcca
cggtatgaactgcccaatctcattattcaggtagaaaccgagatgcaggaggcggcagaa
cggcttgattttgaacgggccattgtgctgcgggataagctgaaaaaactgaatgcggaa
gtgcagaaagggtga
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