KEGG   Methanogenium sp. S4BF: L1S32_07480
Entry
L1S32_07480       CDS       T09590                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mesb  Methanogenium sp. S4BF
Pathway
mesb03030  DNA replication
mesb03410  Base excision repair
mesb03420  Nucleotide excision repair
mesb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mesb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    L1S32_07480
   03410 Base excision repair
    L1S32_07480
   03420 Nucleotide excision repair
    L1S32_07480
   03430 Mismatch repair
    L1S32_07480
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mesb03032]
    L1S32_07480
   03400 DNA repair and recombination proteins [BR:mesb03400]
    L1S32_07480
Enzymes [BR:mesb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     L1S32_07480
    6.5.1.6  DNA ligase (ATP or NAD+)
     L1S32_07480
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     L1S32_07480
DNA replication proteins [BR:mesb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    L1S32_07480
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     L1S32_07480
DNA repair and recombination proteins [BR:mesb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     L1S32_07480
   NER (nucleotide excision repair)
    Other NER factors
     L1S32_07480
   MMR (mismatch excision repair)
    Other MMR factors
     L1S32_07480
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-ProteinID: WFN35687
LinkDB
Position
complement(1560320..1561960)
AA seq 546 aa
MDFLAFSRICESLENTNGRLDMTAIVRDALSSLDEADLPLFIRYLMGRTFPDWSQEKIGI
GPNSVYDAVAYVAGRDRRAVVSTVNRSGDPGRAVESLLAKKEQMSFFSESLTLGDIGHDF
TLLAATGGSKSQKEKDRVLRRLFGNASPLEGRYLARLLLGELRIGIGEGTMRDAIAGAFS
VSPAAVEHAYQAANDLGEVALIAHRGEDALYAVHIEPFRPVKMMLAKQGTVTEMLSEAGV
LAAEYKYDGTRFQFHKAGGICRMYSRKLEEVTHAIPDVVEMLDAATPHDIILDGEVIAVR
DGRPLPFQYVLRRFRRKHDVASHIEEITLRPNVFDILWIDGETLIDLPFAQRRERLDAAV
SDAYVAPQLVSGDEEEIDLLYRTALDDGHEGIMIKNPRSPYTPGVRGKLWVKIKPAVDTI
DLVITAAEWGEGKRAHIFGSFLLSCLGDDGSFIPLSKVATGFSDEALQEMYAALSGNILS
EEGKMVHVEPEIVVEVGYAEIQRSPNYTGGFALRFPRFIRLREDKSPEEIETLRMIEERF
AAQSAR
NT seq 1641 nt   +upstreamnt  +downstreamnt
atggattttcttgcattttcccgtatatgtgagtcgctggagaataccaacggcaggctg
gatatgactgccatcgtccgggacgccctttcgtcactcgatgaagcggatctcccgctt
ttcatccgctacctgatggggcggaccttccctgactggagccaggagaagatcggcatc
ggcccgaacagtgtctatgacgcggtggcctatgtggcaggcagggaccgccgggcggtc
gtcagcaccgtcaaccgcagcggggaccccggcagggcggttgagtcactgctcgcgaaa
aaagagcagatgtcgtttttctccgagtccctgacactcggtgacatcgggcatgacttc
acgctccttgccgcaaccggggggagcaaatcccagaaagagaaggaccgggtactgcga
cggctctttggcaacgcctcacctcttgaaggccggtatctggcccgtctgcttttaggg
gagctcaggataggcatcggcgaagggacaatgcgggatgccattgcaggggccttttcg
gtcagccctgccgccgtggagcatgcctatcaggcggcaaatgatctgggcgaggtggcc
ctcatcgcacaccggggcgaggatgccctgtatgcagttcatatcgagccgttcaggccg
gtaaagatgatgcttgccaaacagggcacggtgaccgagatgctcagcgaggcaggcgtg
cttgcggcagaatacaaatacgacggaacccggtttcagtttcataaggcagggggcatc
tgccggatgtactcccggaagctcgaggaggtgacccatgccatccccgatgtcgtggag
atgctcgatgcagccacaccgcatgacatcatccttgacggcgaggtcatcgctgtccgt
gacggccgccccctgcccttccagtatgtgctccgccggttccggcgcaagcatgacgtc
gcttctcatattgaggaaattactctcagaccaaatgtctttgacattctctggatcgac
ggtgagacgctcattgaccttccctttgcacagcgcagggagcgtctggatgcggctgtt
tcggacgcatatgtggcaccccagctggtaagcggggatgaagaagagattgacctcctc
taccgcactgcccttgacgacgggcatgagggcatcatgatcaagaacccccgctcgccc
tatacgccgggtgtccgcggcaaactctgggtgaaaatcaagccggcggtggacaccatt
gatctggtgatcaccgctgcggagtggggggaggggaaacgggcgcatatcttcgggtcg
ttcctgctctcctgtctgggtgatgacggttcgtttatcccgctctccaaggtggcgacc
ggtttttcggatgaggcgctgcaggagatgtatgccgccctctccgggaatatcctctca
gaagaagggaagatggtccatgttgaaccggagattgtcgtggaagtggggtatgcagag
attcagcggagtccgaattataccggcgggtttgccctccggttcccccggtttatccgt
ctgcgggaagataaaagcccggaggagattgaaaccctccggatgattgaagaacggttt
gcggcacagtcggctaggtga

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