KEGG   Manihot esculenta (cassava): 110599692
Entry
110599692         CDS       T05761                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03082  ATP-dependent chromatin remodeling
mesc03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    110599692
   03083 Polycomb repressive complex
    110599692
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mesc03036]
    110599692
Enzymes [BR:mesc01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     110599692
Chromosome and associated proteins [BR:mesc03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     110599692
   HDAC complexes
    Sin3A-HDAC complex
     110599692
    BRAF-HDAC complex
     110599692
    REST complex
     110599692
    SHIP complex
     110599692
    MiDAC complex
     110599692
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     110599692
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    110599692
  Chromatin remodeling factors
   NuRD complex
    110599692
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 110599692
NCBI-ProteinID: XP_021591917
LinkDB
Position
14:5157408..5161654
AA seq 469 aa
MGDTTGGASLPSTGTDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHR
RMEINRPFPAGPADIRRFHSDDYVKFLASVSPESLADPAHNRHLKRFNVGEDCPVFDGLF
GFCQASAGGSIGAAVKLNRGDADIALNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVH
RRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGAGQGKNYALNIP
LNDGMDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF
LRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHIEP
SNMENLNAPKDMERIRNILLEQLSKLPNAPSVPFQTTPSTTEVPEEAEEDMDRRPKRRIW
NGEDYGSDHDEDEKLRPRSLNIDGNAVAKDEMRDYTDEMEDKKEEHPQS
NT seq 1410 nt   +upstreamnt  +downstreamnt
atgggcgacacaaccggtggggcttctctcccgtccaccggtaccgacgccaaaaagcgc
cgcgtgacctacttctacgagcccactatcggcgattattactacggccagggacaccca
atgaagccccaccgaatccgcatggcacacaatttgattgtgcactactccctccaccgt
cgcatggagatcaaccggcccttccccgcgggtcccgccgacatccgtaggttccattcg
gatgactacgtcaagttccttgcttccgtgtctccagagtctctggcggatcctgcgcat
aataggcatctcaagaggtttaatgttggggaggattgcccagttttcgatgggcttttt
gggttttgtcaggcgtctgcgggtggctcgattggggctgctgttaagctcaatcgaggt
gatgcggatattgctttgaactgggctggcggtttgcatcatgctaagaagagtgaggcg
tccgggttttgttacgttaatgatattgttctgggaattctggaattgctaaaggttcac
aggcgtgtcctgtatgttgatattgatgtccaccatggagatggtgttgaggaggcgttc
tatactactgatagggtcatgacagtatcttttcataaatttggagatttctttccaggg
acaggacacataaaggatactggtgctgggcaagggaaaaactatgccctgaatattcca
ttaaatgatgggatggatgatgaaagttttcgcggtctgtttcgtcccattatccagaaa
gtcatggaggtttatcaacctgatgcagttgttcttcaatgtggggctgattcattgtct
ggtgataggttggggtgcttcaacttgtctgtgaagggccatgctgattgccttcgtttt
cttagatcttttaatgttcctctgatggtcttgggtggtggtgggtatactattcggaat
gttgcccgttgctggtgttatgagacagcagttgctgtaggggtagaacctgataataaa
ttgccttacaatgaatactacgagtactttggcccggattacacacttcacattgaacct
tccaacatggagaacctgaatgcacctaaagatatggagagaataaggaacatactatta
gagcaactctctaaactgcctaatgcacccagcgtaccttttcagacaacaccatccacc
actgaagtcccagaagaggctgaagaagacatggacagaagacctaaacgtcgcatatgg
aatggtgaggattatgggtctgatcatgatgaggatgagaagcttcgacctagaagtttg
aacattgatggcaacgctgttgcaaaagatgagatgagggattacacggatgaaatggaa
gacaagaaagaagagcatccacaatcttga

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