Manihot esculenta (cassava): 110599715
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Entry
110599715 CDS
T05761
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110599715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110599715
03012 Translation factors [BR:
mesc03012
]
110599715
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110599715
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110599715
Translation factors [BR:
mesc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110599715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
Dicer_dimer
T2SSE
ABC_tran
AAA_11
PhoH
Motif
Other DBs
NCBI-GeneID:
110599715
NCBI-ProteinID:
XP_021591950
LinkDB
All DBs
Position
14:9153088..9172126
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AA seq
1230 aa
AA seq
DB search
MLPHPVHHILLNPPSLQFPFTSHPKTLKPSLSPSSSTTATSSTIVMKDRPPSSYGAVYVP
PHQRLRSVINASNYSSSSAVPASPFDSKVSKNQSSVLSHIHSSRVPYFQQQQEKQRGNGV
CDSNHVNNNSNNHKFVSAYDDGISEEGSDREMECSMVMHGAFLSDNMEEWRRKLIMLLRD
KEKQELVSREKKDRRDFEQIATLASRMGLYSHLYVKVVVVSKVPLPNYRFDLDDKRPQRE
VSLPFGLQRRVDSYLREYLFQKSKTKERFPDISFSRSSSSSSLATDEGLFEQPELPVSSK
AVMDKILWQRSLQLCNQQQAWQDSPEGRKMLEFRKSLPAYKEKDAILTAISQNQVVIISG
ETGCGKTTQIPQFILESEIESVQGAGCSIICTQPRRISAMSVSERVASERGEQLGECVGY
KVRLEGIRGRDTRLLFCTTGILLRRMLVDRNLRGITHVIVDEIHERGMNEDFLLIVLKDL
LPHRPELRLILMSATLDAELFSSYFGGAPILRIPGFTYPVQTHFLENILEMTGYKLTLHN
QIDDYGQEKVWRTSKQAPGKRKSQIASSVEEALRAADFKEYSPQTRESLSCWNPDCIGFN
LIEYLLCNICENERPGAVLVFMTGWDDICSLKDKLLSHPILGDPSQVLLLTCHGSMASSE
QRLIFDEPNDGARKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWIS
KVSAQQRRGRAGRVQPGECYHLYPRCVYEAFAEYQLPEILRTPLQSLCLQIKSLKLGSIS
EFLSRALQSPELLAVQNAIDYLKIIGALDKNENLTVLGQYLTMLPLEPKLGKMLILGAIF
NCLDPILTVVCGLSVRDPFLTPMDKRDLAEAAKSQFSRDYSDHLALVRAYEGWKDAEIDF
AGYDYCWKNFLSIQSMKAIDTLRNEFFSLLKDAGLVDSNTATCNAWSHEEHLIRAIICYG
LYPGLSSVVHNEKSFSLKTMEDGQVLLYSNSVNARESKIPYPWLVFNEKIKVNAVFLRDS
TAISDSVLLLFGGSISKGDIDGHLKMLGGYLEFFMEPDIAETYQSLRRELDELIQTKLLN
PRMDIHAYHELLSAIRLLVSEDKCDGKFVFGRQVLKPSKISVISTQPALMSRTESGPGGD
NSKSQLQTLLTRSGYAAPIYKTRQLKNNQFRATVEFNGMQIMGQPCNNKKSAEKDAAAEA
LQWLMGGTQTGHEYVNHMSMLVKKSKKDHY
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgctccctcatcctgttcatcatattctcctcaatccgccttctctgcaatttcctttc
acttcacatcccaaaaccctaaaaccctcactctccccttcctcttccaccaccgccacc
tcctccactatagtaatgaaggaccgaccgccttcctcgtatggtgctgtctatgtccca
cctcatcaacgtctgcgctccgtcatcaacgcgtctaattatagctcctcctctgctgtc
cctgcttctccatttgactctaaagtctccaaaaatcaaagctccgttttaagccatata
cacagctctcgtgtaccttatttccagcagcagcaagagaaacagcgggggaacggtgtt
tgtgatagcaatcatgttaataataatagtaataatcataagttcgtttctgcatacgac
gatgggatctctgaggagggatccgatcgggagatggaatgctcgatggttatgcatggg
gctttcctttctgataacatggaagagtggaggcggaagctaatcatgcttttgcgagac
aaggagaagcaagagttggtctcaagggaaaaaaaggatagacgtgattttgaacaaata
gcaactctggcaagcagaatgggtttgtatagccatctatatgtaaaagttgttgtagtt
agtaaggtcccactgccaaactacagatttgatttggatgataagcgtccgcagagggag
gtgagcttgccctttggtttgcaaagaagagttgattcatatcttagagaatatctcttt
caaaagtccaagactaaggaaagatttccagatatttccttttcaagatcaagcagcagc
agcagtctagctactgatgaagggctttttgaacaaccggagctgccggtttccagcaag
gctgtaatggataaaattctatggcagagaagtttgcaactgtgcaatcagcaacaggct
tggcaggattctccagaaggcagaaaaatgctggaatttcggaaaagtctccctgcctat
aaagagaaagatgctatcttgactgccatttcacaaaatcaggtggtcattatctcaggt
gaaactggttgtggcaagaccacacaaattccccagttcatattagaatctgagatagaa
tctgtccaaggagctggttgtagtattatatgtacacagccaagacgaatatctgccatg
tctgtttctgaacgagttgcttcagagagaggggagcagttgggtgaatgtgttggatat
aaagttcggcttgaaggtataagaggaagagatactcgccttctgttctgcaccacaggc
atcttgctgagaagaatgcttgttgatagaaatttgaggggcataactcatgttattgtg
gacgagattcacgaacgtggaatgaatgaggactttctgcttattgtccttaaagatctc
cttccccaccggccagaactgaggctgattctgatgagtgcaaccctcgatgcagagctt
ttctcatcctactttggtggagctccaatacttcgcattccaggttttacatacccagtt
caaactcattttctggagaatatcctggaaatgaccggttacaaattaaccttacacaac
caaattgatgattatggccaagagaaggtgtggaggacaagtaaacaagctccaggaaag
aggaagagccaaattgcttcttctgttgaggaagcactaagagctgctgatttcaaggag
tatagtccccaaactcgagagtctttgtcatgttggaatccagattgcattggttttaat
ctcattgagtatcttttatgtaacatatgtgagaatgagaggcctggtgctgttctagtc
tttatgactgggtgggatgacatatgttctctgaaggataagctcctatcacatcctatt
ttaggagatccaagtcaagtattgttgctcacttgtcatggttctatggctagctcagag
cagagattaatatttgatgagcccaatgatggtgcgaggaaaatagtgctagctactaat
attgctgagacaagcatcacaatcaatgatgttgttttcgtactcgactgtggaaaggca
aaggagacttcatatgacgccctgaataatactccttgcctgcttccttcctggatttcc
aaggtttctgctcaacaacgaagaggaagagccggccgcgttcaaccaggagaatgttac
catctttatcctagatgtgtttatgaagcctttgcagagtaccaattaccagaaattttg
aggacacctttgcagtctctctgtctgcaaatcaaaagtttgaaactcgggagtatttcc
gagtttctctcaagggctttgcagtcacctgagttgttggcggttcaaaatgctattgac
tacttaaaaatcattggggccttggataagaatgaaaatttgactgttctaggacaatat
ttgactatgcttcccctggagcctaaacttgggaagatgctcatactaggtgctatcttc
aattgcctggatccgatattaactgttgtttgtggccttagtgttagagatcctttcttg
acaccaatggataagagggatcttgcagaggctgctaaatctcaattttcccgtgattat
agtgaccatcttgcccttgtccgggcatacgagggctggaaagatgctgaaatagatttt
gcaggatatgactattgttggaaaaattttctatccatacaatctatgaaagcaattgat
actcttcggaacgagttcttctccttgctcaaggatgctggcctagttgatagcaacact
gccacctgtaatgcatggagccatgaggagcatctcattcgagcaattatttgctatggt
ctctatccaggactttcgtctgttgtgcataatgaaaagtcattttctctgaaaactatg
gaagatggacaagtgcttctttactctaactcggtcaatgctcgggaatctaaaattcct
tatccgtggctggtcttcaatgagaagataaaggttaacgctgttttccttcgggattca
acggctatttccgattcagtgttgcttctgtttggcggaagcatctctaagggggacatt
gatggacatctgaagatgctgggaggatatttggagttcttcatggaacctgatatagcc
gaaacatatcaaagcttgaggagagaacttgatgaactgattcagaccaaacttttgaat
cccagaatggatatacacgcatatcatgagctcctatctgccatacgtttactggtttca
gaggataaatgtgatggtaaatttgtatttggtcgtcaagttctgaagccctcaaagatc
tctgttatatcaacacagccagccttgatgtcaaggactgaaagtggtcccggaggtgat
aattctaagagtcagctccaaacattgctaaccaggtcaggatatgctgcaccaatttac
aagacaaggcaattgaagaacaaccaatttcgagctactgtggagttcaacggaatgcaa
attatggggcagccttgcaacaacaagaagagtgcagagaaagatgcagcagctgaggcc
ctgcagtggctaatgggtgggacccagacaggacatgaatacgtgaatcacatgtcaatg
ctggtaaagaaaagcaagaaggaccattactga
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