Manihot esculenta (cassava): 110599729
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Entry
110599729 CDS
T05761
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110599729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110599729
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110599729
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_2
TPR_MalT
TPR_10
TPR_14
ARM_TT21
TPR_19
YafO_toxin
Motif
Other DBs
NCBI-GeneID:
110599729
NCBI-ProteinID:
XP_021591981
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Position
14:11000593..11009550
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AA seq
864 aa
AA seq
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MDPRDSSSSQSTPSAIRDAAAASSSTAGEDDAILSVTAALAKDAALHFQSLRFAECLAVL
HQLKLKKEDDPKVLHNIAIAEYFRDGCSDPRKLLEVLNNVKKKSEQLAQASGEQVDAGSN
AGNRVISGSKESGTMAHQFSATNSSTLVYMDDFDSAVVTLNIAIIWFHLHEYTKALSVLE
PLYNNIEPIDETTALHVCLLLLDVALACQDAAKSADVLIYLEKAFGVSSTSQGDNASMTN
QQSANLVAKSSSILSGSSALDASNSDLAPSGNALENSLSRTLSLSEESLEYETMFSLDIS
GQNLTRPSGFPSSNDLSRIQLDRCISSIDLKLMLQLYKVRFLLLTRNLKQAKREVKLAMN
IARGRDSSTALLLKSQLEYARGNHRKAIKLLMASSNRAEMGISSMFNNLGCIYFRLYKYH
TSSVLFSKALSSSSSVRKDKPLKLSTFFQDKSLLIIYNCGIQHLSCGKPLLAARCFQKAS
LIFYNLPILWLRLAECCLMALEKGLIKVGRTPGKSEIIVHVVGKGKWRHLAIENGSSRNG
CLDFVEREDLFLGSERQLKLSVSLARQCLLNALHLLDCAGMKDLKSSLPSSISLEENESS
EGEAVKNSYHRGLTGLDTKASTLSVGLGQLNANGDAKEQKGATSQENMHNSISYFEDTRW
RENQMIKQALLANLAYVELELENPEKALSTANSLLELSECSRIYVFLGHVYAAEALCLLN
KPKEAAEHLSIYVSGGSNVELPFSQEDCDQWKVEKTFDCEDSNGGSVAKTSSPEESQGIV
FHKPEEARGILYANFATMYAAQGELERAHHFVTQALSLVPDSPEVTLTAVYVDLVLGKSQ
AAISKLKHCSRVKFVPSHVQLNKS
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggacccgcgagattcttcttcgtcgcagtcgacgccctccgcgattcgggatgctgct
gctgcttcatcgtccactgccggtgaggacgatgccattctttctgtcactgctgctctt
gctaaggacgccgccctccatttccaatctctccgttttgctgagtgtctcgctgttttg
catcagctcaagttaaagaaagaagacgatcccaaagtgcttcataatattgcaattgcg
gaatactttcgtgatggttgttcagatccaagaaagttgcttgaagtacttaataatgtc
aagaagaaaagcgagcagcttgctcaggcttctggtgagcaggttgatgctgggagcaat
gctggaaatagagttatttcaggctctaaagaaagtggtacaatggcacatcaattttct
gctacaaatagttcgactttggtttacatggatgattttgactcggcagttgtaacatta
aatattgcaattatctggtttcatcttcatgaatatactaaagcattatcagttctggaa
cctttgtataacaatattgagcccattgatgagacaactgctctccatgtttgccttctg
ttgctagatgttgcacttgcctgccaggatgcggcaaaatctgctgatgtgctgatctat
ctagaaaaagcttttggtgtcagctccacaagtcaaggtgataatgcaagcatgacaaat
caacaatctgcaaatctagttgcaaaatcatcctctattctgagtggttcatcagccttg
gatgcatctaattcagatttagcaccaagtggaaatgccttggaaaattctttgtcgaga
actttatcattatcagaggagtcactggagtatgaaaccatgttttcgttggacataagt
ggacagaacttgacaagaccatctggttttccatcttctaatgatctttctaggatccaa
cttgataggtgtatatctagcattgatctaaagcttatgttgcagctttacaaggtccga
tttctacttctcacaaggaacttaaaacaagcgaagcgtgaagtcaagcttgccatgaac
attgcacgtggtagagactcgtccacggctctccttttgaagtctcagcttgaatatgct
cgtgggaatcatcgtaaagccatcaagttgttgatggcatcaagtaaccgcgctgagatg
gggatttcaagcatgttcaacaatcttggttgcatttattttcggctttataaataccac
acatcatctgtgctcttttccaaggcactatctagtagttcgtcagtacggaaggataag
cctctgaaactgtcaacttttttccaagataaatctctcctcattatctacaattgtggc
atacagcacttatcttgtgggaagcccttgctggctgctcgctgtttccagaaagcaagt
ctaatattttacaaccttcctatcttgtggttacggcttgctgagtgttgtctgatggcc
ctagagaagggacttataaaagttggtcgaacgccagggaaatcagaaattatagtccat
gttgttggcaagggaaaatggaggcatcttgcaatagaaaatgggagttcacgaaatgga
tgtttggattttgttgaaagggaggacttgtttttgggcagtgaaaggcaactgaagctc
tctgtgtcccttgcccgtcagtgtctcctcaatgccttgcacttgttggactgtgctggt
atgaaagatttgaagtccagtttaccctccagtatctccttggaagaaaatgaatcaagt
gaaggagaagcggtcaagaattcataccacaggggtttaactggcctagataccaaagca
tcaactttatctgtgggcttaggtcagcttaatgcaaatggggatgcaaaggagcagaag
ggagcaacaagccaggagaacatgcataactccatctcttactttgaagatactcgttgg
agagagaatcagatgattaagcaagctcttcttgctaacttggcttatgtagagttggaa
ctagaaaaccccgagaaggctttgtccacggcaaattctctcttggaactttcagaatgc
tcaagaatttatgtttttcttggtcatgtgtatgcagcagaggccctctgcttgctgaac
aagcctaaggaagctgctgaacacttgtcaatttatgtgtctggaggaagtaatgttgag
ttgcccttcagccaggaggactgtgaccaatggaaagtggagaaaactttcgattgtgaa
gattccaatggaggatcagttgcaaagacttcttctcctgaggaatcgcaaggtattgtg
ttccacaagccagaagaggcacggggtatcctttatgccaatttcgcaaccatgtatgcg
gcacaaggtgagcttgaacgggcccaccattttgtgacgcaagcattgtcccttgtaccc
gacagtccagaggtcactttgacagcagtttacgtggacctcgtgctcggtaagtcacaa
gcagctatttccaagttaaaacattgtagtcgggttaagttcgttccaagccatgtacaa
ttgaataaatcttga
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