Manihot esculenta (cassava): 110600064
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Entry
110600064 CDS
T05761
Name
(RefSeq) serine/arginine-rich splicing factor SR45 isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03013
Nucleocytoplasmic transport
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110600064
03015 mRNA surveillance pathway
110600064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110600064
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110600064
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_ACIN1
RRM_10
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
110600064
NCBI-ProteinID:
XP_021592458
LinkDB
All DBs
Position
14:complement(955685..962072)
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AA seq
424 aa
AA seq
DB search
MAKPTRGRPSRPSRSASSSRSRSKSRSRSYSGSDSRSSSRSRSLSSRSRSRSRSFSSSSS
PSRSLSSGSRSPPAQRKSPAEVPKRGRTPPPQSRKTSPPPRKTSPIRESRVLHVDALSRN
VHEGHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRAAAEKALLYMDGAQIDGNV
VRARFTLPPRQKVSPPPKPVAAAPKRDAPKTDNASADIEKDGPKRQREPSPHRKPPTSPR
RRSPVARRGGSPRRLPDSPPRRRADSPVRRRVGSPYRHGDTPPRRRPASPPRGRSSSPPR
RYRSPARGSPRRIRGSPVRRRSPPPPPRRRTPPRRVRSPPRRSPLRRRSRSPIRRPARSR
SRSLSPRSRGRGPAARRGRSSSYSGSPSPRKVTRRISRSRSPRRPLRGRSTSNSSSSSSP
PRKP
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggccaagccaacgcgaggccgtccctcgcggccttcaaggtccgcatcttcctcccgg
tcccgctccaaatcacggtcacgctcttactccggttcagattcacggtctagctctcgc
tcccggtcattatcctcccgttctcgttctcgctctcgatcgttctcttcgtcttcatct
ccttctcgcagcctcagctctggtagtcgcagtcctcctgctcagaggaagagtcctgct
gaagtgcctaaacgtggtcgcactccgccgccacagtctagaaaaacttctccgcctcca
aggaagacctctcccattcgtgagtctcgtgttcttcatgttgatgccctcagcagaaat
gtgcatgagggccatttaaaagaaatattcagtaattttggtgaagttgtacatgtggag
ctggcaatggaccgtactgttaatcttccaaaagggtatggatatgttgaatttaagaca
agggctgctgctgaaaaggccctactgtacatggacggggcccagattgatggcaatgtt
gttcgagcaaggttcacattacccccacgacagaaggtttcaccacccccaaaacctgtt
gctgctgctccaaagcgagatgctcccaaaactgataatgccagtgcagacattgagaag
gatggaccaaaaaggcaaagagaaccttctccccatcgaaaacctccaacctcaccacga
agaagatcccctgttgctcgaagaggtggatcccctaggcgtcttccagattctcctcct
cgtcgacgggctgattctcctgttcgtcgacgagtgggatctccttaccgtcatggggat
acaccaccaagaaggagaccagcatccccacctagaggtcgttcttcatctccaccaagg
cgttacagatcccctgcaaggggttctcccagaaggattcgtgggagtcctgtgcgcaga
cgttctcctcctcctcctccaaggcgacgcacacctcctagaagagtccgtagtcctcca
agaaggtctccacttcgtcgacgtagccgctctcctattcgcaggcctgctcgctcacgt
tcaagatcactttcaccaaggagcagaggccgaggtccagctgcaagacgtgggaggtca
tcctcctattctgggtcgcctagtccacgcaaggtcacccgcagaatatcaaggagccgc
agtcctagaaggcctttgaggggaagaagcaccagcaacagcagcagcagcagctcaccg
cctcggaagccatag
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