Manihot esculenta (cassava): 110600272
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Entry
110600272 CDS
T05761
Name
(RefSeq) autophagy-related protein 16 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
110600272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mesc04131
]
110600272
03029 Mitochondrial biogenesis [BR:
mesc03029
]
110600272
Membrane trafficking [BR:
mesc04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
110600272
Others
Specific organelles associated proteins
Auto phagosome
110600272
Mitochondrial biogenesis [BR:
mesc03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
110600272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
EIF3I
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
ANAPC4_WD40
ATG16
Beta-prop_WDR41
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_VPS8
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_ACSF4
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_NWD2_C
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_IFT122_1st
WDR54
Ge1_WD40
Beta-prop_Nup120_160
Cytochrom_D1
Beta-prop_RIG_1st
Beta-prop_EIPR1
KNTC1_N
PEP5_VPS11_N
PQQ_2
Beta-prop_Vps41
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
110600272
NCBI-ProteinID:
XP_043806341
LinkDB
All DBs
Position
14:complement(4833565..4837440)
Genome browser
AA seq
529 aa
AA seq
DB search
MDGFCPARQLMVSLVDSNAAESQEELAKEAIKHALKALRKRHLLEEAAHAPAYTALSRPI
IFQGSEWKEKAENLELELQQCYRAQSRLSEQLVVEVAESRASKAALEEKEAAFTDLQKEL
AQTRDECSQLKVDLEEKIKALELVVSENHSLRKQLEEMTVKAKNAEAENKILVDRWMLQK
MQDAERLNEANALYEEMIDRLKARGLEKLAQQQVDGVVRQSEGGTMSFVESTIPAACKHK
ITAHDGGCASIMFEYNSSKLISGGQDRSIKMWDTNTGSLSRTLYGCLGSVLDLSVTHDNR
SVIAASSSNNLYVWDANSGRVRHTLTGHIDKVCAVDVSKISSRHIVSAAYDRTIKVWDLH
KGYCTSTIVFHSNCNALCFSMDGQTICSGHVDGNLRLWDIHTGKLLSEVAAHSLAITSIC
LSQNGNVVLTSGRDNLHNLFDMRSLEVCGTLRATGNRVASNWSRSCMSPDDNYVAAGSAD
GSVYIWSISKAEIVSTLKEHTSPVLCCSWSGLGKPLASADKNGIIYTWA
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggatgggttttgtcctgccaggcaattgatggtttcgcttgtggactcaaacgcagca
gagtctcaggaggagcttgcgaaggaagctataaagcacgcgcttaaggcgttgaggaag
cgccatttgcttgaagaagccgcccatgctcctgcttatactgctctttccagaccgatt
atctttcagggctcagaatggaaggagaaagcagaaaatcttgaattggaacttcagcaa
tgttacagagctcagtctcgattatctgagcaacttgtagtggaggtagcagagtccaga
gcatcaaaggctgcactggaagagaaagaggcagcattcactgatttgcaaaaggagttg
gctcaaacaagggatgaatgctctcaattaaaggtagatttggaagaaaagattaaggct
ctagaattggttgtcagtgagaatcactcacttcgaaagcaattggaagagatgactgtc
aaggctaagaatgcagaagcagaaaataagatattagttgatcgctggatgctgcaaaag
atgcaggatgctgagcgtcttaatgaggctaatgcactatatgaagaaatgattgaccgg
ctcaaggcaagaggtttagagaaacttgctcagcagcaagtggatggagtggtccggcaa
agtgaaggtggtactatgtcttttgtcgaatcaaccattcctgctgcatgcaagcacaaa
attactgctcatgatggtggctgtgcttctataatgtttgagtacaactcaagcaaattg
attagtggtggacaggatcgatcaatcaaaatgtgggatacaaatacaggatccttaagt
cgtacactatatggttgccttggctctgttcttgatctttctgtgacccatgataataga
tctgtcattgcagccagtagctcaaataacttgtatgtatgggatgccaactcagggcgt
gtccgtcacactctcacaggccacattgacaaagtgtgtgccgtggatgtcagcaaaatt
tcaagtcgacatattgtcagtgctgcttatgatcgcactataaaagtgtgggatttgcat
aagggttactgcaccagcacaattgtcttccacagcaattgcaatgctctttgtttcagc
atggatggacagaccatttgctcaggccatgttgatgggaatcttcgattatgggatatc
catacaggaaagttactcagtgaagttgctgcacattcacttgcaattacgtctatatgt
ctatctcaaaatggaaatgttgtattgacgagtggaagagacaacttgcacaacttattt
gatatgaggtctttggaagtttgtggtacgttaagagctactggaaacagagtggcatct
aattggagtcgctcttgtatgagtcctgatgacaactatgttgccgctggatcagctgat
ggatctgtatacatttggtcaatatccaaagctgaaattgtaagcactctgaaggaacac
acttctcctgtcctctgttgttcatggagtggacttggaaaaccattagccagtgctgac
aagaatggaatcatatatacctgggcttga
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integrated database retrieval system
