Manihot esculenta (cassava): 110600371
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Entry
110600371 CDS
T05761
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110600371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110600371
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110600371
U7-dependent histone pre-mRNA processing factors
110600371
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
110600371
NCBI-ProteinID:
XP_021592912
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All DBs
Position
1:complement(32137984..32148875)
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AA seq
741 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSRVASTIDAVLL
SHSDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKAVSEFDLFTLDDID
SAFQNFTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE
RHLNGTVLESFVRPAVLITDAYNALSNQPPRQQRDKEFLEKTILKTLEAGGNVLLPVDSA
GRVLELILILEQFWAQSLLNYPIFFLTYVSSSTIDYVKSFLEWMSDSIAKSFETSRDNAF
LLKHVTLLINKSELDNAPNGPKVVLASMASLEAGFSHDIFVEWAADAKNQVLFTERGQFG
SLARMLQADPPPKAVKVTMSRRVPLVGDELIAYEEEQKRLKKEEELKASMIKEEELKASL
GPDSNTSDPMVIDASNNRASLEAVGSHGTGYRDIFIDGFVPPSTSVAPMFPFYENTTEWD
DFGEVINPDDYVTKDDDMDQAAMHVGGDIDGKLDEGSASLILDTKPSKVVSNELTVQVKC
SLVYIDYEGRSDGRSIKSILAHVAPLKLVLVHGSAESTEHLKQHCLKHVCPQVFAPQIEE
TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGRTESGTLSLLPITTAAPPH
KSVLVGDLKMADFKQFLASKGVQVEFAGGALRCGEYVTLRKVGNVSQKGGGSGTQQIVIE
GPLCEDYYKIREYLYSQFYLL
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgggaacatcggtgcaggtaacgccactatgcggagtatacaacgagaatccactatcc
tacttggtctcaattgatggcttcaatttcctaatcgattgcggctggaacgaccacttc
gacccatctcttcttcaacctctatctagggtagcttcgacgatagatgcagtattgttg
tcgcattccgatacgcttcacctaggcgcattaccctatgccatgaaacagctcggcctc
tcggctccagtgtattctactgagccagtctaccgattaggtcttctaactatgtatgat
cagtatctctctcgaaaggctgtttcggagttcgatttgtttactttggatgatattgac
tctgcttttcagaattttaccaggctaacttactctcagaatcatcatctttcgggaaaa
ggagaggggattgtgattgctcctcatgtggccggacatctcttaggaggtactgtttgg
aagataaccaaggatggtgaggatgtagtatatgctgttgacttcaatcaccgtaaagaa
aggcatttgaatggaactgttctggaatcatttgtccgacctgctgttctcataactgat
gcctataatgctttgagtaatcagcctcctagacagcaaagagacaaagaatttctagag
aagactattttaaagactcttgaagcgggtggaaatgtattacttccagttgatagtgct
gggcgagtgttggagcttatcttaatattggaacagttttgggcacaaagtctattgaac
tatcccatattctttctcacatatgtgtcatcaagtaccattgactatgtcaaaagtttc
ttagagtggatgagtgattcaatagcaaagtcttttgaaacttctcgtgacaatgctttc
cttctaaagcatgtgacacttctaatcaacaagagtgaacttgacaatgctccaaatggt
ccaaaggttgttctagcatccatggccagtttggaagcaggtttttcccatgacatattt
gttgaatgggcagcagatgctaagaaccaagtgcttttcacagaaagaggccaattcggc
tccttagctcgtatgcttcaggctgatccacctccaaaggctgttaaagttaccatgtca
aggagggttcctttggttggggatgagctaattgcttatgaagaagagcaaaagcgattg
aaaaaggaggaggaactgaaagctagcatgatcaaagaggaagaattaaaggcatctctt
ggacccgatagcaatacaagtgatccaatggtcattgatgctagcaataaccgtgcttcc
ctagaagcagttggttcacatgggactggataccgggacatattcattgatggatttgtt
cctccatccactagcgttgcaccaatgttcccattttatgaaaatacaaccgagtgggac
gattttggtgaagtcataaatcccgatgactatgtaactaaggatgatgacatggaccag
gcagctatgcatgttggaggagatattgatggaaaacttgatgaaggatctgctagtttg
atacttgacacaaagccttcaaaagtagtgtccaatgaattgactgttcaagtgaagtgt
tcattggtttatatagactatgaaggtcgttctgatggacggtcaattaaatcaattctc
gcccatgtggctcctctgaagcttgttttggtgcatggatcagccgagtccacagaacat
ctgaagcagcactgcttaaaacacgtctgtcctcaagtttttgctcctcaaattgaggag
accattgatgttacctctgatttgtgtgcttacaaggtacaactgtctgagaagctgatg
agtaatgtgctatttaaaaagttgggagattatgaaattgcttgggtggatgctgaggtg
gggagaacagaaagtggcacgttgtcattattgcccatcacaactgcagcccccccacat
aaatctgtccttgttggtgatctaaaaatggcggatttcaaacagttcctggctagcaag
ggtgtccaggttgaatttgctggtggagcattacgatgtggagagtatgtcactcttcgc
aaagttgggaatgtaagccagaagggtggtggttctggcactcagcaaattgttattgaa
ggaccattatgcgaagactactataagattcgggagtatctctattcacaattttatttg
ctctaa
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