Manihot esculenta (cassava): 110600472
Help
Entry
110600472 CDS
T05761
Name
(RefSeq) ubiquitin receptor RAD23c isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03420
Nucleotide excision repair
mesc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110600472
09124 Replication and repair
03420 Nucleotide excision repair
110600472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
mesc03051
]
110600472
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110600472
Proteasome [BR:
mesc03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
110600472
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
110600472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPC-binding
UBA
ubiquitin
Rad60-SLD
UBA_7
Rad60-SLD_2
UBA_RAD5A
CUE
Dsc3_N
UBA_3
TECR_N
Ubiquitin_4
SIP1
Motif
Other DBs
NCBI-GeneID:
110600472
NCBI-ProteinID:
XP_043806689
LinkDB
All DBs
Position
14:complement(8382068..8387005)
Genome browser
AA seq
439 aa
AA seq
DB search
MRISVKTLKGTTFDLEVKPEDTIADVKKSIETTQGVDVYPAGQQMLIYQGKVLKDNTTID
ENKVAENSFVVIMLTKNKSSAGEGSTASTASTTKARQTSTPVSTAPQAPVPTFAPPAPAP
APAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPSPAPALAPAPAPAP
APVLSANAVSETDVYGQAASNLVAGSNLEGAIQQILDIGGGTWDRDTVVRALRAAYNNPE
RAVEYLYSGIPEQAEVPPVTRVPVSGQPANPPAQPQQPVQPSPVPSAGPNANPLDLFPQG
VPNVGSGAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLVRLIQEHQA
DFLRLINEPVEGGEGNILGQLQAAMPQTVTVTPEEREAIERLEAMGFDRALVLEVFFACN
KNEELAANYLLDHMHEFED
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgaggatttccgttaagactttgaagggcactaccttcgacctcgaagtgaaacctgaa
gacaccattgctgatgtcaaaaagagcatagaaactacccaaggtgtggatgtttatcct
gctggacaacagatgcttatttatcaggggaaagtccttaaagataacactacaattgat
gaaaataaggttgccgaaaacagttttgttgtgatcatgttaacgaagaataagagctca
gctggggagggttcaactgcatcgactgcttctacaactaaggcacgtcagacgagcacc
ccagtgtcaacagcacctcaagctcctgtaccaacctttgcaccgcctgcccctgcccct
gcccctgcccctgcccctgcccctgcccctgcccctgcccctgcccctgcccctgcccct
gcccctgcccctgcccctgcccctgcccctgcccctgcccctgcccctgcccctgcccct
gcccctgctcctgccccttcccctgctcctgctcttgctcctgctcctgctcctgctcct
gctccagttttatctgctaatgctgtgtcagagaccgatgtttatggtcaagcagcatca
aatttggttgcgggaagtaacttggagggagctatccaacaaattcttgatataggtgga
gggacttgggatagagatactgtagttcgtgctcttcgtgctgcttacaacaatcctgag
agagctgttgaatacttatattctggtattcctgagcaagctgaagttccacctgtgact
cgtgtccctgtgagtgggcaacctgcaaatcctccagcccaaccgcagcagccagtgcag
ccttcacctgttccatctgctggacccaatgctaatcctctagatctttttccacagggc
gttcccaacgtgggatcaggcgctgctggtgctggaactcttgattttttacggaacagt
caacagttccaagcattgagagcaatggtacaggctaacccacagatactgcagcccatg
cttcaagagttggggaaacaaaatcctcatttagtgaggcttattcaagagcatcaggct
gactttcttcgccttatcaatgaacctgttgaaggtggagaagggaacatcttggggcag
ctgcaagcagcaatgccacagacggtaacagttacacctgaggaacgtgaagcaatagaa
cgtcttgaagcgatggggtttgatcgggcacttgtattagaggtgttctttgcctgcaac
aagaatgaggagctggctgctaactaccttctagatcacatgcatgagtttgaggattga
DBGET
integrated database retrieval system
