Manihot esculenta (cassava): 110600976
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Entry
110600976 CDS
T05761
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110600976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110600976
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110600976
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110600976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_C
HA2_N
Ank_2
Ank_5
AAA_22
ATPase
AAA_19
nSTAND3
SERF-like_N
T2SSE
NSP2_gammaCoV
AAA_16
AAA_7
NACHT
Motif
Other DBs
NCBI-GeneID:
110600976
NCBI-ProteinID:
XP_021593631
LinkDB
All DBs
Position
1:complement(32514490..32523093)
Genome browser
AA seq
1230 aa
AA seq
DB search
MGKKRQKKAEQQENPSVAEATRIRISQILDQFRAAKDQVYTFEANLSNRERAVVHEVCKK
MGMKSKSSGRGNQRRVSVYKNTKKADTAKAKENLTCLKFSEESKLVLQELFANYPPEDGE
FGAKVVGNRKGKDSKVRGMKDDIFSMPSMTKEDIKKKVESLNSRIEKAANLRQIVEERSK
LPIASFRDVITSSVDSHQVVLVSGETGCGKTTQVPQFLLDHKWGKGEACKIVCTQPRRIS
ATSVAERISYERGGNIGDDIGYKIRLESKGGRNSSVVFCTNGVLLRVLVSRGTTRSKREA
SNKSAKDDVSNITHIIVDEIHERDRYSDFMLAIIRDILPLHPHLRLIMMSATLDAERFSQ
YFGGCPIISVPGFTYPVKSFYLEDVLSILKSADNNHIDSAMPSATNKSHELTEDDKAALD
EAINLAWTNDEFDPLLDLVYTEGTPEVYNYHDSLTGLTPLMVFAGKGRVGDVCMLLSVGV
DCHLQDKNGLTALDWAKQENQQETAELLKGHVESALSDSLEQKQLVDKYLATVNPELIDV
VLIEQLLRKICIDSKDGAILVFLPGWDDINKTRERLFANPFFKDSSRFMIISLHSMVPSM
EQKKVFKRPPQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWV
SKASSRQREGRAGRCQPGICYHLFSKLRAASLPDFQVPEIRRMPIEELCLQVKLIDPNCK
IEDFLRKTLDPPVPETIHNAIIVLQDIGALSVDEQLTELGEKLGCLPVHPLTSKMLFFAI
LMNCLDPALTLACASDYRDPFTLPVLPNEKKRANAAKFDLASLYGGNSDQLAVIAAFECW
KNAKGRGQEAWFCSQYFISSSTMNMLHGMRKQLQSELIRNGFIQEDVSRYSTNAHDPGIL
HAVLVAGLYPMVGRFLPPRNGKRFHVETATGAKVRLHPHSLIFKLSFKKTDDCPLIVYDE
ITRGDGGMHIRNCTVVGPLPLLLLATEIVVAPPEDDDEEDDEGDDDDNDGSDAAGEDESD
EDEMETDGKLGGNNVEKIMSSPDNSVTTVVDRWLYFGSTALDVAQIYCLRERLSAAVLFK
VQHPREVLPPALEASMHAIAHVLSYDGLSSVALPSESVDSLTSMIRATGIDNSAPGRRRG
PGQNSNGFLKSLMSHNTQHATPHYHRARLQGFKGKSYGNGTSSQDVGKIPHQRPPMRGPN
AVGYNSGTCEQWNPRGDSSKRQRGNASKKQ
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaagagacagaagaaagcagagcaacaagaaaaccctagtgtggctgaagct
actcggattcgaatttcccaaatactagaccagttccgtgctgctaaagatcaagtttac
acatttgaagctaatttatcaaaccgtgaacgtgctgtggtgcatgaagtatgcaagaaa
atgggtatgaaatccaagagttctgggcgtgggaatcagcgaagagtctctgtttacaag
aatacaaagaaagcagacactgcaaaggcaaaggaaaatctcacatgtttgaaattttca
gaagaatcaaaactcgtcttgcaagaattatttgcaaactacccacctgaggatggagag
tttggtgcaaaagtagttggaaatcgtaaaggaaaggatagtaaagtacgaggaatgaaa
gatgatatcttcagtatgccttcaatgaccaaagaagatataaaaaagaaagtggaatcg
ctgaattctagaatagaaaaggctgcaaacttaagacagattgttgaagagagatctaag
cttccaattgcatcctttagggatgtcatcacttcctctgtagattctcaccaggttgtt
cttgtatctggtgagactgggtgtggaaagactacacaggtcccacaatttctattggat
cataagtggggaaaaggcgaggcctgtaaaatagtctgcacacaacctcgtcgtatctca
gcaacatcagttgctgagagaatatcttatgaaagaggaggaaacattggagatgatatt
ggatacaagattcggttagaaagtaaaggtggaagaaactcttcagttgtgttctgcaca
aatggggttctactgagggtgctggtttctaggggcacaactcggtcgaagagggaagct
tctaataaatcagccaaggatgatgtttctaacataactcacattattgtggatgaaatt
catgaaagggatcgctactcagatttcatgttggcaattatcagagatatacttcctttg
catcctcatcttcggctgataatgatgagtgctactcttgatgctgaacgattttcacaa
tattttggtggctgcccaattatttctgttcctgggttcacttatcctgtcaaaagtttc
tacttggaggatgtactatcaatcctaaaatctgcagataataatcatattgattctgct
atgccaagtgccacgaataaaagccacgagcttacagaagacgacaaagctgctttagat
gaagctatcaatttggcttggacaaatgatgaatttgatccccttctggatttggtttat
actgaaggaacccctgaggtttataattatcatgattctttgactggactaacaccattg
atggtatttgctggaaagggtagagtgggtgatgtttgcatgcttctctctgttggtgtg
gattgtcatttacaggacaagaatggactaacagcattggattgggccaagcaagaaaac
cagcaagaaactgctgaattattaaaaggacatgttgaaagtgccttgagtgactccctg
gaacaaaaacaattagttgacaaatatctagcaacagtaaaccctgaacttattgatgtt
gttcttatagagcagttattgaggaaaatatgtattgattcaaaagatggtgcgatcctt
gttttccttcctgggtgggatgatataaataagactagggagaggttatttgcaaaccca
tttttcaaagattcttccaggtttatgataatctctctccattcaatggttccatctatg
gaacagaagaaagttttcaaacggccacctcagggttgccgcaaaatcattctttcaact
aacattgctgaaagtgccattacaattgacgatgttgtgtatgtcatagatagcggccga
atgaaagaaaaaagttatgatccttataacaatgtatcaacccttcagtcttcctgggta
tccaaagcaagttcaaggcagcgcgagggtcgtgcaggtcgttgtcagcctgggatatgc
tatcatcttttttcgaagcttcgagcagcttctttgccagatttccaagttcctgaaatt
aggagaatgcccattgaagaactctgtttgcaagtgaagttgattgatcccaactgtaag
atagaagatttcctgcggaagacactggaccctccagttcctgaaaccatacataatgca
atcattgttctccaggatattggggctttatcagtagatgaacaattgacagaactagga
gagaagctaggctgcctacctgttcatccattgacaagcaagatgcttttttttgcaata
ttgatgaattgccttgacccagctttgacattggcatgtgcctctgactatagagatcca
tttacccttcctgtgttgcctaatgaaaagaagagagctaatgctgctaaatttgatctt
gcttcattgtatggcggaaacagtgatcagctagcagttattgcggcctttgagtgctgg
aaaaatgctaaaggaaggggtcaagaagcatggttttgttctcagtactttatctcttca
agcaccatgaacatgctgcatggtatgcgtaagcagcttcagtcagaactaattcgtaat
gggttcattcaggaagatgtctcacgttatagtacaaatgcacatgaccctggaatactc
catgctgtgcttgttgctggtttgtatcctatggtggggagattccttccacctagaaat
gggaagcgttttcatgtagaaactgcaactggtgctaaagttcggttgcaccctcattcg
cttatttttaaattatcttttaagaaaactgatgattgccctttgattgtatatgatgaa
ataacccgtggggatgggggtatgcacataaggaactgtactgtggttgggccactccca
ttgttattgcttgcaactgagattgtagttgctcctccggaggacgatgatgaggaagat
gatgagggtgatgatgatgacaatgatggaagtgatgctgcaggtgaagatgaaagtgat
gaggatgagatggaaacagatggcaaattgggtggaaacaatgttgaaaaaataatgtca
tctcctgataattcagttacaacagttgtggaccgctggctttattttgggtcaacagcc
cttgatgttgctcagatttactgcttgcgagagcgattatcagcagcagtcttattcaaa
gtacaacatcctcgggaagtacttcctcctgcccttgaggcctcgatgcatgcaattgct
catgttctttcttatgacgggctctccagtgtagcattaccttcagaatctgtagactcg
ctgacatcaatgatccgtgcaactgggattgacaactcggctccagggaggaggagaggt
ccaggccagaattcaaatggcttccttaaatcactgatgagccataacacacagcatgca
actccacattatcacagagctagattacagggattcaagggaaaatcatacggaaatggg
acgtcaagccaagatgtaggtaagatcccccatcaaaggcctccaatgcgaggtcccaat
gcagttggttacaattcaggtacttgcgaacaatggaatcccaggggtgattcctctaag
cggcagcgcggaaatgcatccaagaagcaataa
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