Manihot esculenta (cassava): 110601013
Help
Entry
110601013 CDS
T05761
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110601013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110601013
03012 Translation factors [BR:
mesc03012
]
110601013
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110601013
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110601013
Translation factors [BR:
mesc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110601013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
AAA_19
T2SSE
ATPase
AAA_30
Dicer_dimer
AAA_16
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
110601013
NCBI-ProteinID:
XP_021593678
LinkDB
All DBs
Position
1:complement(32566126..32579908)
Genome browser
AA seq
1207 aa
AA seq
DB search
MSCYSTIFQSSIRTSRNMAMRTTTASLHFHFHRPPSKTFRHPILFPLASFVSFTNPQIVA
SKAALFSPLDFKHRGTVRCTGAFCFLDCRTSALPVSCLQNTNYGRFAYHEVSSDDSDREF
GSPSQQSLTGSTLDNVDDWRWKLTMLLRNKDEQEVVSREKKDRRDFEHLSELANRMGLHS
RQYSRVVVFSKVPLPNYRPDLDDKRPQREVILPFGLQREVDAYLNAYLSKKSMKRGNFSA
NSLSSLSGGNMAMNEGFCEQPEPLLRNNVVMEKIIGRKSLQLRNKQQEWQESPDGQKMNE
FRRSLPAYKERDALLKVISENQVVIVSGETGCGKTTQLPQYILESEIEAARGAACSIICT
QPRRISAMAVSERVAAERGEKLGESVGYKVRLEGIKGRDTRLLFCTTGVLLRRLLVDRSL
NGVTHVIVDEIHERGMNEDFLLIVLRDLLPRRPELRLILMSATLNAELFSSYFGGAPTLH
IPGFTYPVRAHFLEDILEITGYRLTPYNQIDDYGQDKVWKMQKQTQAFRKRKSQIASAVE
DALEAANFRGYRLRTQESLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINS
LKDQLASHPILGDSSKVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIND
VVFVVDCGKAKETSYDALNNTPCLIPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDA
FADYQPPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVQNAVEYLKVIGALDE
NENLTVLGRHLSILPVEPKLGKMLILGAIFNCLGPVMTVVAGLSVRDPFLMPFDKKDLAE
SAKAQFSARDYSDHLALVRAYDGWKDAERQQSGYEYCWQNFLSAQTMKAIDSLRKQFFCL
LKDTGLIDLKTEDCNMWSHDEHLIRAVICAGLFPGICSVVNKEKSIALKTMEDGQVLLYS
NSVNAGVPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNLSRGGLDGHLKMLGG
YLEFFMKPALGNTYLSLRRELEELIQKKLQDPKLDIQDDNKLLRALRLLISRDQCEGKFV
FARQLPAPPQKATKDVTTGKQPYDNSKNELQTLLVRAGHGAPSYKTKQLKNNQFRSTVIF
NGLDFVGRPCSSKKLAEKDAAAEALLWLKGEVHSSSSSRDINHVSMLLKKSKRKSKDKTP
VHGGKWS
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgctactccactattttccagtcatctattagaacctcaaggaatatggctatg
agaacaaccacagcctctcttcattttcatttccatagacctccatcgaaaacgtttagg
cacccaattctatttccattagcatcttttgtttccttcactaatccccaaattgttgct
tctaaggctgctttgttttcgcccctggattttaagcatcgggggacagttaggtgtact
ggtgctttttgttttttagattgcaggaccagtgctttgcccgtctcttgtctgcaaaac
acgaattatggacgatttgcatatcatgaggtttctagtgatgattcggaccgtgaattt
gggtctccttcccagcagtcattgactggttccacccttgacaacgttgatgattggaga
tggaagttaacaatgctactccgcaacaaagatgagcaagaagttgtttcgagggagaaa
aaggataggcgggattttgaacatctgtcagaattggcaaatcgaatgggtttgcatagc
cgtcagtattcaagagttgttgtcttcagtaaagtgcctctgccaaattacagacctgat
ttggatgacaagcggccccagagagaggtgatattgccttttggactgcaaagagaagta
gatgcctatctcaatgcttacctttccaaaaagtccatgaaaaggggaaacttttctgct
aattcattgtcaagtttaagtggtggaaatatggccatgaatgaaggattttgtgagcag
ccagagccgttgttacggaacaatgttgtcatggagaaaattatcggccggaaaagtttg
caactgcgaaataagcaacaagaatggcaggaatctcctgatggccaaaagatgaatgaa
tttcgccgaagccttcctgcatacaaagaaagggatgcactactaaaggtgatttcggaa
aatcaggtggtgattgtctcaggtgaaactggttgtggtaaaaccacacaactccctcaa
tacatactagaatctgagattgaagctgctcgtggagctgcttgcagtatcatatgtact
cagcctagaaggatatctgctatggctgtatctgaaagagttgcagcagaacgaggagag
aaactgggagaatcagttggttacaaagttcggctggagggaataaaaggaagggacact
cgcctcctcttttgcactactggtgtactattgaggagattacttgttgacaggagtttg
aatggtgtaacccatgttattgttgatgagattcatgaacgtggaatgaatgaagatttc
cttcttatcgtcctgagagatctcctgcctcgtcggcctgagttgaggttgattctgatg
agtgcaaccttgaatgctgagcttttctcatcctactttggtggcgctccgacactccat
attccaggttttacgtatccagtccgagcacattttcttgaggatatcctagaaatcact
ggttaccggttgactccatataaccagattgatgattatggtcaagataaggtttggaaa
atgcaaaaacaaactcaagctttcagaaagaggaagagccagattgcttctgctgttgag
gatgcacttgaagctgccaactttaggggctacaggttacgtacccaagagtctttgtcg
tgttggaatccagattcaattggttttaatctcattgagcatgtgctttgtcacatagtc
aagaaagagaggcctggtgctgtgttggtttttatgactggttgggatgacataaattct
ttgaaggatcagctagcaagtcatcctatcttgggtgattctagcaaagtattgctactt
gcttgtcatggttctatggccagctctgagcagaggttaatatttgataagcccgaagat
ggagtacggaaaattgttcttgctactaatatggctgagactagtattaccatcaatgac
gtggtctttgtggttgactgtgggaaggcaaaggagacatcatatgatgcactaaacaat
actccttgtttgattccatcatggatctcaaaggctgcagcacgtcaaaggagaggaaga
gctggtcgtgttcaacctggcgagtgttatcatctctatcccagatgcgtatatgatgct
tttgctgattatcaaccaccagaacttttaaggacaccattgcagtctttgtgcttgcaa
atcaagagtctccaacttggtagtatatcagagttcctttctagggcattgcaaccacca
gaacctctatcggttcaaaatgctgttgaatatttgaaagtgataggagctttggatgag
aatgaaaatctaacagtgctaggacgccacttgtcgatacttccagttgagcctaagctt
gggaaaatgctcatattaggggccattttcaactgtctaggtcctgtaatgactgttgtt
gctggtcttagtgtcagagatccatttttgatgccatttgacaagaaggatcttgctgag
tctgccaaagcacagttctctgctcgtgattacagtgaccatcttgcgcttgtccgggca
tatgatggttggaaggatgctgaaagacaacaatctggttatgagtactgttggcaaaat
tttctttctgcacagactatgaaagccattgattctcttcggaagcaattcttttgcttg
ctcaaggatactgggctcattgatctgaaaacagaggactgcaacatgtggagccatgat
gagcatcttattcgagcggtcatttgtgctggcctgttccctgggatatgctctgtggtg
aacaaggagaagtctatagcattgaaaacaatggaggatggtcaagtacttctgtactct
aattctgtgaatgctggggtgcccaaaattccatacccatggttagtatttaatgaaaaa
gtgaaagtgaattcagtgtttctccgggattctactggcgtatctgattctgtgttgctt
ttatttggaggaaacctttcaagaggtgggctggatggacacctaaaaatgttgggaggg
tacttggaattttttatgaaacctgccttgggaaatacatatttaagcttgaggagagag
cttgaggagctaattcagaagaaacttcaagaccccaagttggatatacaagatgacaat
aagctcttgagggcattaagattgcttatttcacgggatcaatgtgagggtaaatttgta
tttgctcgccagctgccagcacctccacagaaggcaacgaaagatgtaacgactggcaaa
caaccatatgataattctaaaaatgagctacaaactttgcttgtcagggcgggacatgga
gcaccgtcctataagacaaagcaactgaaaaacaatcagtttcgctctacagtgattttt
aatgggttggactttgtagggcggccttgcagcagtaaaaaacttgcagaaaaggatgct
gctgctgaggctttactgtggttgaagggtgaggtccattcatcttcatcctccagagat
attaaccatgtgtcgatgcttttaaagaagagtaaacgcaaaagcaaagacaagactccg
gttcatggtggtaaatggagttaa
DBGET
integrated database retrieval system
