Manihot esculenta (cassava): 110601021
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Entry
110601021 CDS
T05761
Name
(RefSeq) leucine-rich repeat extensin-like protein 5 isoform X1
KO
K13095
splicing factor 1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110601021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110601021
Spliceosome [BR:
mesc03041
]
Complex A
Other components
Complex A specific factors
110601021
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
KH-I_KHDC4-BBP
KH_1
SF1-HH
Motif
Other DBs
NCBI-GeneID:
110601021
NCBI-ProteinID:
XP_021593688
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Position
15:complement(8364876..8370569)
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AA seq
837 aa
AA seq
DB search
MSAEVDQTSAVEHHKNKMSAINTSSGASTTGPKVSIFAAKSGFVIPKNKLSGSLVPIFRG
GKKSGGNDAANEDSKNQELRKTKWGPDPYQDAAVRRGRALAYQTRVDQITQKLELGILEP
VETQDLQADQSADLKLSSPPIDIKELKLERREIIGEILKLNPSYKAPPDYEPLLKEASVP
IPVKDHPGCNFVGLLFGSGGETHKRLEKETGAKIRVFGTKANAGKKVEISPSDMNETHLA
YEELYVHVSAETFEKVDEAVALIELLITSVSGSLVAGNNVNVPNQSQEVSAPFRVPNGDQ
GVTQLAFGPAQTPQRGQFQYQGPWLPSVSAQAQVHPPGFIPLRNSSVPIDNNLLHVQSPL
TPTSMPSLFGPRPIPSPGFNSNFLNGSPVPSRPQLPIQVPSHPYAPRNLPMPAPQPSSVQ
SNVLASLSFTGNQAPPAMPSPVAGPLVPSLPQPVSSVPPGPQSDRSLTSVGSSSGWPLAS
GGVPAPLVPGNMGQMVPPMGSLQGPRPVVPQSGFLSSALPSTMPAANIVPPVSFPSAPSS
INVLMNQVSGASSLVSVLPPQVSSSSTPLSHALINPVSGSTPISLPMTSASQPTLQSGTA
GSFPGNVSNPTLTRPAIAGPAMQHSGPGDFTFQPCHPQNLAPHLRPSNQPMTQDPPLARP
MMQPSPPAPSFRLAVPNSIPPPGMPVFPRSQVSNQMGQTQAHMSAIPFVGNSAGPVPPRV
PAFSNASPIIPPARNFSQAARLPDLPGPFPPRPGNPLQVQHNYPGPITPRGNFMGPNQQS
NRNLSFAPSPGGQQIYDPFSPTSVPIKPQQPGGNLLNGRKQETDPEYEDLMASVGVK
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctgaggttgaccagacatctgcagttgaacaccacaagaataagatgtctgca
ataaatacttcgtcgggtgcatcaaccactggtccaaaggtctctatatttgctgcaaag
tctggatttgtcataccaaaaaacaaactatcaggttcattggttccaatcttcagagga
ggtaagaagtcaggaggcaatgatgcagccaatgaagacagtaagaaccaggagctgagg
aaaacgaaatggggtccagatccatatcaggatgctgcagttagaaggggaagagcctta
gcatatcagactcgagtggatcaaatcacacaaaagctggagttgggaattctggaacct
gttgaaactcaagacctacaagctgatcagagtgcagatctcaagttgtccagtccacca
attgacatcaaggagttgaaacttgaaaggcgggagattataggtgaaatactcaaactg
aatccaagctacaaggcaccacctgattatgaacctttgctgaaagaggcctcagttcca
attcctgtcaaagatcaccctgggtgcaattttgttggtctattatttgggtcaggagga
gagactcacaagcgactagaaaaggaaactggagctaaaatacgagtatttggtaccaaa
gcaaatgcaggaaagaaggtcgaaatttctccatctgatatgaatgagacccacttggct
tatgaggagttgtatgttcatgtatcagccgaaacatttgagaaagttgatgaagcagtt
gccctaattgaattgctaataacctcagtatcaggaagtctagtggccgggaataatgtg
aatgttccaaatcaaagtcaggaggtatctgctccttttagagtcccaaatggtgaccag
ggagtgacacaattagcatttggacctgcacaaactcctcaacgaggtcagtttcaatac
caaggaccatggttaccatcagtctcagctcaagctcaagtgcaccctcctggcttcatt
ccccttcgtaattcttctgtaccaattgataacaaccttctgcatgtacaatcacctttg
actcctacaagcatgccctcactgtttgggcctcgaccaattccttcacctgggttcaat
tcaaattttctaaatgggtctcctgttccttccaggccacagctgccgattcaagttcca
tcacatccatatgcaccaagaaaccttcccatgccagctcctcagccttcatctgttcaa
tctaatgtcttggcttcactttcattcactggtaaccaagccccacctgccatgccatct
ccagttgctggaccattagtgccatcattgcctcagcctgtgtcaagtgttccaccagga
ccacaatctgacagatcattgacatctgtggggagctcgtctggatggcctctggcttcc
ggtggtgttccagcacctttagttccaggtaacatgggacaaatggttcctcccatgggt
tctttgcaggggcctcggccagtagttccacaatcaggttttttgtcttctgcactgcct
tcaacaatgcctgcagctaatatagttcctcctgtatcatttccatctgctccttcctca
atcaatgttctgatgaatcaagtaagtggagcctcaagtttagtttcggttctgccccct
caagtgagttcttcctctacacctctatctcatgcattaataaaccctgtgtcgggaagc
acgccaatttctttgccaatgacatctgcatcacagccaactctgcagtctggaactgcg
ggatcctttcccggaaatgtgtcaaatcctactctcacacgaccagcaatagctggtcct
gcgatgcagcattcaggtcctggtgatttcacttttcaaccttgtcatccgcagaatctg
gcacctcatctgaggccaagcaatcaacctatgactcaggatcctccacttgctagacca
atgatgcaaccatcacctccagcaccatctttcaggttggctgtgccaaattcaattcct
ccacctggtatgcctgtatttccaaggtcacaggtaagcaatcaaatgggtcaaactcag
gctcacatgtccgctattccttttgttggcaattctgctggcccagttccacccagagtt
ccagcattttcaaatgcaagtccaattatacctccagctcgaaacttcagtcaggctgcc
cgactgcctgatttgccaggcccctttcctcctagaccagggaatcccctacaagttcag
cataattatccaggtcctataaccccgcgtggcaatttcatgggaccaaatcaacaatcc
aacagaaatctgtcttttgcacctagtcctggagggcaacaaatttatgatccattttca
ccaacctctgttcctataaagcctcaacagccaggaggtaatctgttaaatggaagaaag
caggagactgaccctgaatatgaagatttgatggcctctgtcggagtaaagtaa
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