Manihot esculenta (cassava): 110601170
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Entry
110601170 CDS
T05761
Name
(RefSeq) FACT complex subunit SSRP1 isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mesc03000
]
110601170
03036 Chromosome and associated proteins [BR:
mesc03036
]
110601170
Transcription factors [BR:
mesc03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
110601170
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
110601170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
POB3_N
SSrecog
Rttp106-like_middle
HMG_box
HMG_box_2
CDC45
HMG_WDHD1
YL1
DNA_pol_phi
Motif
Other DBs
NCBI-GeneID:
110601170
NCBI-ProteinID:
XP_043807155
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Position
15:complement(18505771..18541376)
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AA seq
641 aa
AA seq
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MTDGHLFNNISLGGRGGTNPGQLKLHSGGIQWKKQGGGKAVEVDKADITGVTWMKVPRTN
QLGVRIKDGLYYKFTGFRDQDIANLTNSFQSSCGVTLEEKHLSVTGRNWGEVDLNGNMLT
FLVGSKQAFEVSLADVSQTQLQGKNDCILEFHVDDTTGANEKDSLMEISFHIPGNNTQFV
GDENRPPAQVFREKILSMADVDPGGEEAVVTFDGVAILTPRGRYNVELHLSFLRLQGQAN
DFKIQYSSVVRLFLLPKSNQPHTFVIVTLDPPIRKGQTLYPHIVLQFDTDNVVQNTLSIN
EDLLSTKYKDKLEPSYKGLIHDVFTTVLRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDG
LLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQ
RNEYHNLFDFISGKGLKIMNLGDMQTTNGVAAVLQSDDDDAVDPHLERIKNEAGDESDEE
DEDFVADKDDEGSPTDDSGDEESDASESGDEKKKPMKKESTKEPSSSKGVSKKKVKDGNE
DGSKKKKQKKKKDPNAPKKAMSGFMFFSQMERENVKKSNPGIAFGDVGKILGDRWKQLSV
EDKEPYEAKARADKKRYKDEVSGYKNPQPVNLGLGNESDSD
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgactgacggtcatctcttcaacaatatctctctcggaggccgtggaggcacgaaccca
gggcagctaaagttacattcagggggaattcaatggaagaaacagggtggtggtaaagca
gtggaagttgataaagctgatattacaggagtgacatggatgaaggtaccaaggacaaat
caacttggtgttcggatcaaagatggcttgtactacaaattcactggcttccgggaccag
gatattgcgaacttgaccaattctttccagagcagttgtggagtaacactagaagagaag
catctttcagttactggacgtaattggggagaggttgatttaaatggaaatatgcttacc
tttctggttggttcaaagcaagcatttgaggtatcattagcagatgtctcacaaactcaa
ctacaaggaaaaaatgattgtatcttggagttccatgtggatgatacaactggagctaat
gagaaagattcattaatggagataagttttcacatacctggtaacaacacccaatttgtt
ggtgatgaaaatcgacctcctgctcaggtttttcgagaaaagattttgtcaatggcagat
gttgatcctggtggtgaagaagctgttgttacatttgatggtgttgcaatcctgacacca
aggggccgttacaatgttgaacttcatctgtcattcttgcggctccaaggacaggccaac
gatttcaaaattcaatacagcagtgttgttcgcctctttttgcttccaaagtctaaccag
ccgcatacttttgtcattgttactctggaccctcctatacgtaaggggcaaactttgtat
ccacacattgtgttgcagtttgatactgacaatgtggtccaaaacacattgtcaatcaat
gaagaccttttgagcacaaagtacaaagacaagttagaaccatcttataagggactcatt
catgatgtgttcacaacagtattgcggggcttgtctggtgctaaagtaactaaaccagga
aaattccgtagctgtcaagatggttatgcagtgaagtcatcactgaaagctgaagatggt
cttctttatccacttgagaaaagcttcttcttcttaccaaaacctcctacccttattctt
catgaggagattgattatgttgaatttgagagacacgcagctggtggctcaaatatgcat
tattttgatcttcttataagactcaaaagtgagcaagaacatctgttccgaaacatccag
agaaatgagtatcacaatctttttgacttcatcagtgggaagggtctgaagattatgaac
ctaggtgatatgcaaacaacaaatggtgtggctgctgttctccaaagtgatgatgatgat
gctgttgacccacatcttgagcgcattaagaatgaagctggagatgagagtgatgaagag
gatgaagattttgttgcggacaaggatgatgaaggctctcctactgatgattctggggat
gaagaatctgatgctagtgaaagtggagatgagaaaaagaagcctatgaaaaaggaatcc
acaaaggagccctcatcttcaaagggtgtatctaagaagaaagtgaaagatggaaatgag
gatggatctaagaagaaaaaacaaaagaagaagaaggatccaaatgcaccaaagaaggca
atgtctggtttcatgttcttctcacaaatggaaagggagaatgtgaagaaaagtaatcct
ggcattgcttttggggacgtaggaaaaattcttggagacaggtggaagcaactgtcagtg
gaagataaagaaccatacgaagcaaaggctcgagcagataaaaagcgttataaagatgaa
gtcagtggctacaagaaccctcagcctgtgaatttggggttggggaatgaatctgacagt
gactag
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