Manihot esculenta (cassava): 110601349
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Entry
110601349 CDS
T05761
Name
(RefSeq) putative CCR4-associated factor 1 homolog 8
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110601349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110601349
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110601349
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110601349
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
110601349
NCBI-ProteinID:
XP_021594144
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Position
1:37330147..37331336
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AA seq
288 aa
AA seq
DB search
MGDIRIRKVWACNLIDELQNMDAALQHYRLVSMDMEFPGFLRNTPRRSDEFSLFADMKFN
VDNLKILQLGITVFDENGIIAGTWEFNFKFLLERDVFDPNSIEFLKTNGIDFEELKTNGI
NMVSFPNLFAPLFNRHRNLKWITFHGLYDLAYMVKLLTQQRLPMSILGFTDIIAALFGCY
MFDVKYIARFYNDLHRGELGLEKLAKILGVRRVGGAHHAGSDSLLTACVFTKMKAVYGIE
ESKFAGFLYGISTRIYKPVRTQVLSLPRIGNQGFSSYGRCSLLTSVNQ
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgggcgatataaggattagaaaagtttgggcttgtaaccttatagacgagctgcaaaac
atggatgctgctttgcaacactatcggctggtttccatggacatggagttccctggattt
cttaggaacactcctcgccgatctgatgagttctcacttttcgctgatatgaaattcaat
gtcgacaacctcaaaatactccaattgggtattacagttttcgatgaaaatggtattatt
gctggaacttgggagtttaatttcaagttcctactggaaagagacgtttttgatcctaac
tccattgagtttctaaagacgaacgggatcgattttgaggagttgaagacgaacgggatc
aatatggtatccttccctaacctgtttgctcctcttttcaatagacacaggaatttaaaa
tggataacttttcatggattatatgacttggcctacatggtgaagctgcttactcagcaa
cgattgcccatgtctattttgggtttcactgacattatcgccgctctatttggctgctat
atgtttgatgtcaagtacatcgcacgattctacaatgatctgcacaggggcgagcttgga
ttggagaaattggccaagattcttggagttagacgagttggaggggctcatcacgcagga
tctgatagtttattaacagcttgtgtgttcacaaagatgaaagcagtctacggaatagag
gaatctaaatttgcagggttcttatatggcatcagcaccagaatttacaagccagtacgc
acacaagtcctttcacttcctcgaattggcaaccaaggattctccagctacggcaggtgc
tcccttctcacttctgtcaaccaatga
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