Manihot esculenta (cassava): 110601506
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Entry
110601506 CDS
T05761
Name
(RefSeq) SWI/SNF complex subunit SWI3D isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110601506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110601506
03036 Chromosome and associated proteins [BR:
mesc03036
]
110601506
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110601506
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110601506
PBAF complex
110601506
GBAF(ncBAF) complex
110601506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
110601506
NCBI-ProteinID:
XP_021594351
LinkDB
All DBs
Position
15:complement(13756148..13763785)
Genome browser
AA seq
1014 aa
AA seq
DB search
MEDRPAGTSAGAGVESPASAEPASSRRRVGGQKRKVNALSTSSSSSTPSKRLTREKGLIS
HPPIHNGGPLTRARQSPNNLASSASAGTAASGFKLEEKVAVSDAAMVAALDEEVSKLEEL
QAAIEVEFEGIRSRDSNAHVVPSHCGWFSWTKIHLLEERALPSFFNGKSQTRTPDTYMEI
RNWIVKRFHTNPNIQIELKDLSELEVADLDAKQEVLEFLDYWGLINFHPFPQIDSNVSAD
GVRDVKNDSLLDKLFHFESIQPCPPVAPKPNLSTPALASGLFPESSLAEELVRAEGPAVE
YHCNSCSTDCSRKRYHCQKQADYDLCAECFNNGKFGSDMSSSDFILMEPAEAPGLSGGKW
TDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDVFLDCDDDIDGSSKE
TTDQPATNDDTSVSKDVTETSGDKSGSKEDLPLSLALEASKPEDAVEAEKPNNASEAVID
EKSSKSEESSEVKAVLDSSENLALKALTEAFEAVGYPCAPENQPSFAEVGNPVMALAAFL
ARLVGSDVAMASARSSLKSLNSNSPGVQLAARHCFLLEDPPDDLKGPAGPNCSAMEMANQ
DAQQYNHEGQTQKGLNGRDLSIDHNDKKTEDSAPEEKQPPDSINDDPTEKVNTANEAGTE
ISHEENESGKLKESSELEYQKNPQISSLKESNEMQAKPEHPLSFVQEKEGSSAALTSKQT
EVSKDVEMVPDLKSSENNEPCQLVAPLLVEEASQSQAAETSKNVDIISDSLPAGKNVQLV
KSNSVGDQSQPIEVPKDVDMSSELPSEAKECQQPAAPNSVVENGTITVKDQKGSKKEKPD
CRKIKEDNTIDKLKRAAVSALSAAAVKARILEKQEEDQIRQLAALVIEKQLHKLEMKLAF
FNEMDHIIMRVREQLDRSRQRLYHERAQIIAARLGLPASSSRGMPPTSPTNRVATNFVNS
IPRPPMSMTSQRPPIARPMGTLASTPSNSFVPTTTAGSSIRPSGQDKLSSVGTK
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atggaggatagaccagcggggacctcagccggggcgggagtagaatcaccggcgtcggcc
gagcccgcatcgtcacggaggcgagtcggagggcaaaagagaaaagtcaacgcgctctcg
acatccagctcttcgtctacaccgtcgaaacggctcacacgcgagaagggcctgatctct
caccctccgatccacaatggaggtccgttgaccagagcccgccagagccccaataatttg
gcttcttcggcttccgccgggacagccgcttctggatttaagctcgaggagaaggttgct
gtgtccgatgctgctatggtggcagcgctggatgaggaggtgagtaagctagaggagttg
caggcggcgatagaagtggagtttgagggtattagatccagagattctaacgcccatgtg
gtgcctagtcattgcggttggttttcatggacaaaaattcacctccttgaggagcgtgca
ctgccttctttctttaatgggaagtcccaaaccaggacacctgatacctacatggagata
cgtaattggattgtgaaaagatttcatacaaatccaaatatacagattgaattgaaagat
ctgtctgagcttgaagttgcagaccttgatgcaaagcaagaggtgctagagttcttggac
tattggggattgattaatttccacccattcccacaaatagattctaatgtcagtgctgat
ggtgtaagagatgtgaagaatgattcattgcttgacaagttatttcactttgaaagcatt
caaccatgtccgcctgttgcccccaagcctaatctttcaactcctgctctggcatctggg
ttatttcctgagtcttcacttgcagaagagttggtaagggctgaggggccagctgttgaa
taccactgcaattcttgttcaactgattgctctcgcaagcgctatcattgccagaagcag
gcagattatgatttatgtgctgaatgctttaataatgggaaatttggctcagacatgtct
tcatcagattttattctcatggaacctgcagaggctcctggtttaagtggtgggaagtgg
acagatcaagagaccctacttcttcttgaagcattggaactttataaagaaaattggaat
gagatagcagagcatgttgccacaaaaactaaagctcaatgtatattgcactttgttcaa
atgccaattgaggatgtctttcttgactgtgatgatgatatagatgggagttccaaagaa
actacggatcaacctgcaaccaatgatgatacatctgtttccaaagatgtgactgaaaca
agtggggataaaagtggttccaaggaggatctgcccttgagtttggctctagaagcttca
aaaccagaagatgcagtggaagctgaaaagcccaacaatgccagtgaagcagtaattgat
gaaaaatcttcaaagtcagaagaatctagtgaagtgaaggcagttctggattccagtgaa
aatttggcacttaaagcacttacagaagcatttgaagctgttggttatccttgtgctcct
gaaaatcagccctcatttgctgaagttggaaatcctgtcatggctttggcagcatttttg
gcaagattggtaggaagtgatgtggctatggcttcagctcgcagctctttgaaatcctta
aatagcaattctcctggtgtgcagctggctgcaaggcactgctttctgttggaagatcca
ccagatgacctgaagggaccagctggtccaaattgcagtgccatggaaatggctaatcaa
gatgctcaacaatacaaccatgaaggccaaacccagaaaggtttgaatggaagagacttg
tcaattgaccacaatgacaagaaaactgaagattctgctccagaggaaaagcagcctcca
gattctataaatgatgaccccactgagaaggtaaatactgcaaatgaagcaggcacagaa
atttctcatgaggaaaatgaaagtggtaaattgaaggaatctagtgaattggagtatcag
aagaacccccagataagtagtttaaaggaatcaaatgaaatgcaagcgaagcctgagcat
ccactgagttttgttcaggagaaggaaggatcttcagcagctttgacctctaagcaaaca
gaggtctctaaggatgtagagatggtgcctgatttgaaatcttctgaaaataatgagcct
tgtcaattagttgcaccactgttggttgaagaggcctctcagtctcaagctgcagagaca
tcaaaaaatgtagacattatctcagattctctgcctgcagggaagaatgtgcaactagtg
aaatcaaattcagtaggagatcagtctcagcccatagaggtgccaaaggatgttgacatg
tcatctgaactgccttcagaagcaaaagagtgtcagcagccagctgcaccaaattcagtg
gttgaaaatggaacaattacagttaaggaccaaaaaggcagtaaaaaagagaaacctgat
tgtaggaagattaaagaggacaataccattgataaattaaagcgagctgcagtttctgca
ctttcagcagcagcagtgaaggcaagaattcttgaaaaacaggaagaagaccaaatccga
caacttgctgcattggtgatagaaaaacagttgcataaattggaaatgaaattggctttc
tttaatgaaatggaccacataataatgagggttagggagcaacttgacaggtcaaggcaa
aggctgtaccatgaacgagcgcagatcattgcagcccgactcgggttaccagcatcttca
tctagaggaatgccaccaacgtcgcctaccaacagagttgcaaccaactttgtgaactca
attccaaggcccccaatgagcatgacttcccaaaggccaccaattgcaagacccatgggg
acattggcttccaccccatctaactcatttgtaccaacaactacagcagggagttcaatt
cggccctctggccaggacaaactttcttcagtagggacaaaatag
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