Manihot esculenta (cassava): 110601572
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Entry
110601572 CDS
T05761
Name
(RefSeq) zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mesc01009
]
110601572
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110601572
03041 Spliceosome [BR:
mesc03041
]
110601572
Protein phosphatases and associated proteins [BR:
mesc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
110601572
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
110601572
Spliceosome [BR:
mesc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
110601572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
zf_CCCH_4
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
110601572
NCBI-ProteinID:
XP_021594438
LinkDB
All DBs
Position
15:complement(14067616..14076213)
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AA seq
981 aa
AA seq
DB search
MELKVSSLKSGGISPPHCDSDPEEKEVSDEDDDDRNHKHRRRETRSQSLERDSPEPIFTR
SYRKQHKPFENGHPFRENESQGSETWKNYNNVPQDKDFTSKFVKRRPGMASLPRVGMDLN
QRIRSNQTFSGEHGPGRGRGRDPSSWNQRDSMFSSVDIASQIVQQGAITSGLFAGRGLPN
VSNAQNASWNAFGLFPGIPNGGLDALHSIGLQGTPGPVLNSSLNIGIPRQRCRDFEERGF
CLRGDMCPMEHGVNRIVVEDVQSLSQFNLPVSLPNAPLVGTPAGPGALPSVGAPSTTSMN
GKGHSRNSKLGIVDDAMGLNGGYSGSAGVSGADLYDPDQPLWNNNGPETSNALLAPHSSK
NDETESFMNVDPSDRHNLRLCDTTDNECSIRSTGVPVSSQNTGSSVWGRVGSMKNRLDVR
EKTDLTVSTSDHLENEAKEDHDELANIQGSTCQGKRMTTEGVGPKTIDSAARIQSDTSHN
VRKSSQKALRTLFVSGIPQKNNKRDALLSHFQKFGEVIDIYIPLNGERAFVQFSKREEAE
AALKAPDAVMGNRFIKLWWANRDSIPDDGMVSSSSLSLTPRGMPAGSVPPQSLLGKRGKD
NLQSAVSKGAIVPPSDASLPHSDHPKPFANGPKAPPPMQKKLELEKLRDELRKKQEMLDE
KRNDFRRQLDKLEKQATGVKGEAVVEPAAKRHRVGIATDVAKTTTPRSSDPVVGASSPCA
EMIVDKNKSTENVASSIPKTSASLMQHESTASRQLIRPVAPTGAVFLTNRYKLDNRPTAF
KIIPPLPPGLANVDVLKEFFSLYGDLSAVELEEVDACNDDSDGSEMAKNCSACLTFTTRR
SAERAFFNGRCWQGNNLKFTWVTSSAFGSDLSGRENISSALKCPVDTDVQPTEKLACTGS
GSQEASASENGETETSERNTSADHVELHEVPEPLPTSEHGEDTTKCEDSATSMCSKEEQP
KRELNPTATSGENESHKGHTS
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggagctcaaggtttcatcactaaagtcaggaggtatttctcctcctcattgtgatagt
gatcctgaggagaaggaagttagtgatgaggatgatgatgatcgcaatcataagcatcga
agaagggagacacgatctcaatctttggagagggattctccagaacctatttttacgagg
tcatacaggaaacaacacaaaccatttgaaaatgggcatcctttcagggagaatgaatct
caaggtagtgaaacctggaaaaactataataatgttcctcaagataaagacttcacctca
aaatttgtgaagagacgccctggaatggcatcattacctcgagtgggtatggatttgaat
caaagaatcaggtcaaaccaaacattttctggagaacatggacctggtagaggaagagga
agggaccctagttcttggaaccaacgtgattctatgttcagctcagttgatattgcttca
caaatagttcagcaaggagccattacttctggtctctttgcaggaaggggattgccaaat
gtgtcaaatgcacaaaatgcatcctggaatgcatttgggttgtttcctggaataccgaat
ggtggccttgatgcactccattccattggtttgcaaggaacacctggaccagtactaaat
tcttcattgaatataggcattccccgccagcgatgcagagactttgaggagcgtggattt
tgtctaagaggggatatgtgtccaatggagcatggtgtcaatcgtattgttgttgaagat
gttcagagtctttcgcagttcaatctccctgtttcacttccaaatgcaccgctagtggga
acacctgctggaccaggggctttgccatcagttggtgctccttcaaccacatcaatgaat
ggcaaaggacatagcagaaatagcaagcttggaatagttgatgatgctatgggcttgaat
ggtggatattctggttctgctggtgtgagtggagcagacttgtatgatccagatcagcca
ctatggaataacaatggtcctgaaacatcaaatgcactattagcaccacattcatccaaa
aatgatgaaactgaatccttcatgaatgttgatccttctgaccgtcataatctcaggttg
tgtgatactactgataatgaatgttcaataagaagcactggggttcctgttagttcacag
aatacaggttcatctgtttggggtagagttggtagcatgaagaatagattagatgtgaga
gagaaaacagatttgacagtgagtacatcagatcatttggagaatgaagcaaaggaagat
catgatgaattagccaatattcaaggtagtacttgtcaaggaaagcggatgactactgag
ggtgttggccccaaaactattgattcagcagccaggatacagagtgatacctcgcataat
gtaaggaaatcatctcagaaggcattacgtacactatttgtcagtggtattccacaaaaa
aacaacaaaagggatgctcttctttctcattttcaaaagtttggggaggttattgacatt
tatatcccattgaatggtgaacgagcttttgttcagttttcaaaaagggaagaggcagaa
gctgctttaaaagcacctgatgctgtaatgggcaatcgctttatcaaactatggtgggct
aatcgtgacagcatacctgatgatggcatggtcagtagcagtagtttatctttaactccc
cgaggcatgccagctggttcagttccaccccaatctttattgggtaaaagaggaaaagat
aatcttcaatctgctgtttctaagggtgctatagtccctccctctgatgcatctcttcct
cactctgatcatcctaagccttttgcaaatggtcccaaggctccacctcctatgcagaag
aagctagagttagaaaaattgagggatgaactccgcaagaaacaggagatgctggatgag
aagcgaaatgacttccggcgccagttggacaaacttgagaaacaagctacaggagttaag
ggtgaggctgtggttgagcctgctgctaaaagacacagagtaggaatagcaactgatgtt
gcaaaaactactactccaaggtcctctgatcctgttgttggtgcgtcatctccatgtgct
gagatgatagtggataagaataaatcaactgaaaatgttgcatcatccattcccaaaaca
agtgcatcattgatgcagcacgaatctacagcctcaaggcagctaattcgtccagtggca
cctacaggggcagtctttctgacgaacagatacaagttggataaccggccgacagcattt
aaaataatccctcctttaccccctgggttggcaaatgtggatgtcttgaaggaattcttc
tcgttgtatggcgatctttctgctgttgaactagaagaagttgatgcttgcaatgatgat
agtgatgggtcagagatggcaaaaaattgctcagcctgcttgactttcacaactcgccgc
tcagctgagagagcattttttaatggtagatgttggcaaggcaacaacttgaagtttaca
tgggtgacatctagtgcctttggcagtgacctttctggcagagaaaatatttcatctgcc
ttaaagtgtcctgttgatactgatgtgcagccgactgaaaaattagcatgcactggttct
ggttctcaggaagcttctgcatctgaaaatggggagactgaaacgtcagaaagaaatact
agtgcagaccatgtggagttgcatgaagttccagagccgctaccaacttcagagcatggt
gaggacacaactaaatgcgaggatagtgcaacatcaatgtgcagcaaagaagagcagcct
aaaagagagctcaatccaactgcaacatcaggggagaatgagtcgcataaaggccatacc
agttga
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