Manihot esculenta (cassava): 110601716
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Entry
110601716 CDS
T05761
Name
(RefSeq) cullin-4
KO
K10609
cullin 4
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03420
Nucleotide excision repair
mesc04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110601716
09124 Replication and repair
03420 Nucleotide excision repair
110601716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mesc04121
]
110601716
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110601716
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mesc04147
]
110601716
Ubiquitin system [BR:
mesc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
110601716
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
110601716
TCR (transcription coupled repair) factors
Cul4-CSA complex
110601716
Exosome [BR:
mesc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110601716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
Motif
Other DBs
NCBI-GeneID:
110601716
NCBI-ProteinID:
XP_021594669
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Position
15:9716782..9726340
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AA seq
821 aa
AA seq
DB search
MSLPTKRSATATATPSSSSASATSNFPPMKKAKSQAVSACSPLDHSCNKNGLHHFSSGTT
ADNDVVFDPSSMTLDDDPKLQDFSPPAAANLSRKKATPPQPAKKLVIKLVKAKPTLPANF
EEDTWGRLQSAIKAIFLKQPDSCDLEKLYQAVNDLCLHKMGGNLYQRIERECEAHIHTVL
QSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLF
RKHLSLSPEVEHKTVTGLLRMIEKERLGESVDRTLLNHLLKMFTALGIYAESFERPFLDC
TSEFYAAEGMKYMQQSDVPDYLKHVEIRLQEENERCLLYLDASTRKPLIATAERQLLERH
ISAILDKGFMMLMDGHRIEDLKRMYSLFLRVNALESLRQALSSYIRRTGQGIVMDEEKDK
DMVSCLLEFKASLDTIWEESFSKNEAFCNTIKDAFEHLINLRQNRPAELIAKFLDEKLRA
GNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKL
KTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPP
MDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVV
LMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKIPKGRDVEDDDLFVFNE
GFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITE
LFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgtctctccccaccaaacgctctgccactgccaccgccaccccctctagctcctccgcc
agcgccacctctaattttcctcctatgaagaaggccaagtcccaggctgtctctgcttgc
tcccctcttgaccattcctgtaacaagaacggcctccatcacttcagctccggcactaca
gccgataacgacgtcgtgttcgacccctcttcaatgactctcgatgacgatcccaagctc
caagacttctctcctcccgccgccgctaatttgtcccgcaaaaaggccaccccacctcag
cccgcgaagaagcttgtcatcaagctcgtgaaagctaaaccaacactacctgcaaatttt
gaggaggatacatggggaagactgcagtcggctattaaagctatattcttgaagcaacca
gattcctgcgacttggagaagctttatcaggctgtcaatgatctttgtctgcataagatg
ggtggtaatctttatcagcgaattgaaagagaatgtgaagcccatattcatacagtatta
caatctctggttggacaaagcccagatttggtggttttcttatccctggttgagagatgc
tggcaggatctatgtgaccaaatgttgatgattcgcggtatagccttgtaccttgataga
acatatgtgaaacaaaccccaaatgtacgttcattgtgggacatgggcttgcagcttttc
cggaagcatctttcattgtcccctgaagttgagcacaaaactgttacaggccttttgaga
atgattgagaaggaaaggttaggtgaatcagttgatagaactctcttaaaccatctattg
aagatgtttactgctctaggaatttatgctgaaagctttgagagaccatttctggattgc
acgtctgaattttatgctgctgaaggcatgaaatacatgcagcaatcagatgttccagat
tacttaaagcatgtggagattaggttgcaagaagaaaatgaaagatgcttactctatctt
gatgcaagtactagaaagccactaatagcaactgcagaaagacagcttcttgaacgtcac
atatctgcaattctggataaggggttcatgatgctaatggatgggcacagaattgaggat
cttaagagaatgtactcattgttcttaagggttaatgcccttgagtcattaaggcaggct
cttagctcatacatacgtagaactgggcaaggcattgtcatggatgaagaaaaagataag
gatatggtttcatgcttgttagaatttaaggcttctcttgacacaatatgggaagaaagc
ttttctaagaatgaagcattttgcaatactataaaggatgcatttgaacatctaattaat
cttcgtcagaaccgaccggcagagttgattgcaaagtttctggatgagaagcttcgtgcc
ggaaataaggggacttctgaagaggagttggagggtacacttgataaagtattggtgttg
ttcaggtttattcagggcaaggatgtgtttgaagcattttataagaaggaccttgctaaa
agactactattgggaaaaagtgcctctattgatgcagagaaatctatgatatcaaagctg
aagactgagtgtggcagccagtttacaaacaaacttgaaggaatgtttaaggatattgaa
ctatcaaaggagataaatgaatccttcaagcaatcatcgcaagccaggacaaaacttcca
tcagggattgagatgagtgtccatgtcttaacgacagggtactggcctacatatccaccc
atggatgttaggcttcctcatgagctgaacgtctatcaggatattttcaaagagttctac
ttaagcaagtatagtggcaggcgattaatgtggcaaaattcattgggtcactgtgtgctg
aaagctgaatttccaaaaggtaaaaaggagctggcagtatctctatttcagactgtcgtt
ttgatgttgtttaatgatgcccaaaagcttagttttcaagatattaaggatgctactggc
atagaggacaaagaactgagacggactttgcagtctcttgcatgtggcaaagttcgtgtc
ttgcaaaagatccctaaagggagggatgtggaggatgatgatttatttgttttcaatgag
ggatttactgctcctctatatcggataaaggtcaacgcaatccagatgaaggaaactgta
gaggagaacacaagcaccaccgagagagtatttcaagatcgtcaataccaggttgatgct
gctattgttcggataatgaagacgaggaaagtactaagtcacacacttttaattactgaa
ctcttccaacagctgaagtttcctatcaagccagctgatttgaagaaaaggatagagagc
ctaattgacagggagtaccttgagcgagacaagaacaaccctcaaatatacaattacctg
gcatga
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