Manihot esculenta (cassava): 110601776
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Entry
110601776 CDS
T05761
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110601776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110601776
03036 Chromosome and associated proteins [BR:
mesc03036
]
110601776
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110601776
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110601776
PBAF complex
110601776
GBAF(ncBAF) complex
110601776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
110601776
NCBI-ProteinID:
XP_021594771
LinkDB
All DBs
Position
15:11497904..11501075
Genome browser
AA seq
567 aa
AA seq
DB search
MSVNTNNNNNGNSSNNSNSNLPKSLGQSSSPFGNTGMLNPALPVNPAFSQSQSQVQIGTG
FQGQFQLSQAQATAQAQLRAQQAHAQAQAQAAHAAQVQAVRAQLQAQLQAQGMSPSQAQT
AALGNLGSSSPSFSTPGSMNAKRLPQKPPVRPPGVPMSSMVSPLKTMDLVSAARRKKQKL
PEKQLQDRVAAILPESALYTQLLEFEARVDAALSRKKVDIQEALKNPPCVQKTLRIYVFN
TFANQIKTIPKKPNAEPPTWMLKIVGRILEDGIDPDQPGVVQKSNPLYPKFSYFFKRVTI
MLDQRLYPDNHMIVWEHSRTPATHEGFEVKRTGDKEFTVVIRLEMNYLPEKFKLSPALME
VLGIEVDTRPRIIAAIWHYVKARKLQNPEDPSFFNCDPPLQKVFGEAKMKFTMVSQKISQ
HLSPPQPIVLEHKIKLSGNSPAGTICYDVVVDVPFPIQRELNALLANAEKNKEIETCDEG
ICAAIRKVHEHRRRRAFFLGFSQSPVEFINTLIESQSRDLKLVAGEAGRSAEKERRADFF
NQTWVEDAVIRYLNRKPAAGSDVPGSM
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgaatactaataataataacaacggtaatagtagtaacaatagtaatagtaat
ctgcccaagagccttggacagtcttcatcaccctttggcaatacagggatgcttaatccg
gcattgcctgtcaatccggcattctcacagtcacaatcccaggtgcaaataggcacaggc
tttcagggtcagttccagctgtcccaagcacaggccactgctcaggcacagttgagagca
cagcaagctcatgcacaagcacaggcccaagcagctcatgctgctcaagttcaagcagtg
cgtgcacagctccaagctcaattgcaggcacagggaatgtctcctagccaggctcaaact
gctgcattgggcaacttaggttcatcctcaccttcattttcaactccaggtagcatgaat
gccaagcggctgcctcaaaaacccccagttcggcctcctggtgttcccatgtcaagcatg
gtttccccattgaaaactatggatctcgtgtctgcagctcgcaggaagaagcagaagctt
ccagagaagcaactacaagatagagtggcagcgattctccctgaatctgctctgtatact
cagcttcttgaatttgaggctcgtgttgatgctgctttatctagaaagaaggttgacatc
caggaggcacttaaaaatcctccttgtgttcaaaaaacacttcgcatttatgttttcaac
acatttgccaatcagatcaaaacaattcctaagaagccaaatgctgagcccccaacctgg
atgcttaagatagttgggagaatcttggaagatgggatagatcctgatcaacctggagta
gttcagaaatcaaaccccttgtatcccaagttctcatattttttcaagagagtgactatt
atgttggatcagagattatatcctgataatcatatgattgtgtgggagcattctcgaaca
cctgcgactcatgagggttttgaagtgaagagaacaggggataaagaatttacagtggta
atacggttggaaatgaactatttgcctgagaaatttaagctctctccagctttgatggaa
gttcttggtattgaggttgacacccgtccaaggataatagctgcaatctggcattatgtg
aaagctaggaaactgcagaatcctgaggacccttctttctttaattgtgatccacctctt
cagaaagtatttggggaagcaaagatgaagtttaccatggtctcacagaagatatcccag
catttatctcctcctcaaccaatagttttggagcataagataaagctttcaggtaacagt
ccagctggaactatatgctatgatgtggtggtggatgtccctttcccaatacagagggaa
ttgaacgctctgttggccaatgccgagaagaacaaagagattgaaacctgtgatgaaggt
atatgtgctgctataaggaaagtccatgaacatcggaggaggcgagcattcttccttggg
tttagtcaatcacctgtggaattcattaatactttgattgaatctcagagcagggatttg
aagcttgtagctggagaagctggtcgaagtgctgagaaagaacgccgtgcagatttcttc
aaccaaacatgggttgaagatgccgttattcggtacttaaatcgtaagccagctgcagga
agtgatgttcctggaagcatgtga
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