KEGG   Manihot esculenta (cassava): 110601850
Entry
110601850         CDS       T05761                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 9A
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03020  RNA polymerase
mesc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    110601850
  09124 Replication and repair
   03420 Nucleotide excision repair
    110601850
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mesc03021]
    110601850
   03400 DNA repair and recombination proteins [BR:mesc03400]
    110601850
Transcription machinery [BR:mesc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     110601850
DNA repair and recombination proteins [BR:mesc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      110601850
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS zf-LSD1
Other DBs
NCBI-GeneID: 110601850
NCBI-ProteinID: XP_021594898
LinkDB
Position
15:complement(588565..590552)
AA seq 114 aa
MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEIAENNCVYRNEVHHSVAERTQVLQ
DVAADPTLPRTKSVKCSMCNHQEAVFFQATARGEEGMTLFFVCCNPNCGNRWRD
NT seq 345 nt   +upstreamnt  +downstreamnt
atgagtaccatgaaattttgccgcgagtgcaacaacattctctaccctaaggaggataag
gaacagaagatcctcctctacgcttgccgcaactgtgatcatcaggaaattgccgaaaat
aactgtgtctacagaaatgaggtacatcactctgtagcagagcgcactcaggtattgcag
gatgtagctgcagatccaacacttcctcgcactaaatctgttaagtgcagcatgtgcaac
catcaggaagctgtcttcttccaggcaactgctaggggagaggaaggtatgacgctgttc
tttgtatgctgcaacccaaattgtgggaatcgatggagagattga

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