Manihot esculenta (cassava): 110601989
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Entry
110601989 CDS
T05761
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X2
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110601989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mesc03036
]
110601989
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
110601989
SWR1 complex
110601989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
110601989
NCBI-ProteinID:
XP_021595111
LinkDB
All DBs
Position
15:8783801..8800446
Genome browser
AA seq
2048 aa
AA seq
DB search
MEFNSKESTQRKRKKALEAPKEPRRPKTHWDHVLEEMIWLSKDFESERKWKLAQAKKVAL
RASKGMLDQATREEKKLKEEEQRLRKIALNISKDVKKFWIKIEKLVLYKHQMELDEKKKR
ALDKQLEFLLGQTERYSTMLAENLVDKPLQQLSIVDQQNVPYEERQQNDPKEPAELSAEH
QSDSGDNDNDYDLQSDESEDDEHTIEEDEALITEEERREELAALRDEVDIPVEELLKRYA
LENVSRENTPENNGADLTVEDGDHDESKGKDHSAVSDPEMSCSPVNTGRRCGEENGAMVT
SEIHLSEIEMGETRNQSDVTGDLTKDLLYDSNEEQEDGDFVLANGEEKEHEMDDETTLLE
EEELAKADPSNTMDEILLLQKESEIPLEELLARYKKEINNAEVSDDESGALSDNLLDSPE
IKDVELKQQDASMDENVEPGELLPVEHHLVNEQEAAIGKTPEEGNDSENRIADAAAAARS
AQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMT
IALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWL
KPNFFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILL
TGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVL
RPFILRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISI
IMQLRKVCNHPDLFEGRPIISSFDMAGIDIQLSSSVCAMLSLDPFSTVDLYGLGLLFTHL
DFNMSSWEFEEVNAIVTPSSLIKERANLDNLEEIGSQTKHHKELTGTNFFEEIRKAVLEQ
RLREVKERAASIAWWNSLRCRKKPMYSTTFRELVTIKNQVHDIHRQKADQLTYLYSSKLA
DIILSPVEHFQKMIDLVESFMFAIPAARAPVPICWCSKTRTSVFLHPTYKEKCSEMLLPI
LSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAVLLRKLKSGGHRALIFTQMTKMLDLLEA
FINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLFGADTVIFYD
SDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYN
TEFFKKLDPMELFSGHKALPIKNGQKEKNNGHANEVSLSNADVEAALKYAEDEADYMALK
KVEQEEAVDNQEFSEAIGRLEDDEFVNDDDMKADEPTELEMTTQSKDTGVNINMKEPIEE
KTITFAGNEDDVDMLADVKQMAAAAAAAGQAILTLENQLRPIDRYAVRFLEVWDPIIDKA
AMESEVQFEEAEWELDRIEKYKEEMEAEIDDDEEPLLYERWDADFATEAYRQQVEALAQH
QLMEELEAEANEKEDADDGYCDSMMNEMASNTKPKSKKKQKKAKFKSLKKGSLTSELKHV
KEEPSIETMSLDEDAVGIYYEEGAYSDMTSQYPSVQKKRKKVETVYGESGKSSKKKSKKL
KATSETCLSDLDSSLSGKQQDESVELKPCENMVADHEQRQAGRSKMGGRISITAMPVKRV
LMIKPEKLKKGNFWSRDCVPSPDSWLPQEDAILCAVVHEYGPHWSLACETLYGMTAGGFY
RGRYRHPVHCCERYRELIQRYVLSAPENHFSEKTSSAGSGKALLKVTEDNIQMLLNVAAE
QPDHELLLQRHFTAVLSSVWRMTSRADRQQNLSSRNGIYFGGKFFNSFNQISWNSVKEPA
KRMRFTTSAQSCKLLAAALHEFNSRPLDDAVSISNRIEDTPCFSEQLEVTLEFEKEEGDL
SIPLPPIINLTIPITDPQNFRIKDVGEHNLKAVTNVAESRFRDAARACFEGRPGWASSAF
PANDLKLRAASKPQSLGKHKLSVSDSKPPRSKLKKTSERGEMHNLFAEPALQPLSTVSSR
DPNLRFDLTPAIIQDGWMIDRDSCSISFWDEELPGEFASFKSIPHDYDADLISGLDDFSL
LPEYTDIG
NT seq
6147 nt
NT seq
+upstream
nt +downstream
nt
atggaattcaactccaaggaaagcacgcagaggaagaggaaaaaggcacttgaagctccc
aaagaacctcgtcgtcctaaaactcattgggatcatgttttggaggagatgatttggttg
tcaaaggactttgagtctgagaggaaatggaaattggctcaggctaagaaggttgctttg
agagccagcaaaggcatgttggatcaggctacccgggaagaaaagaaattgaaggaagag
gaacagcggttgcgaaagattgcactcaatatatctaaggatgtgaagaaattctggatt
aaaatagagaagctggtgctttacaagcatcaaatggaacttgatgaaaaaaagaagagg
gcacttgataaacagctcgagtttcttctaggacaaacagagaggtactccacaatgtta
gcagaaaatctagttgacaagccattgcagcaactttccatagtggatcaacagaatgta
ccatatgaggaaagacagcaaaatgatcctaaggaaccagcagaattaagtgctgagcat
cagtcagatagtggagacaatgacaatgattatgatttgcaatcagatgaatcggaagat
gatgaacataccattgaggaagatgaagctcttattactgaagaggaaaggcgagaagaa
ttggcagctttgcgcgatgaagttgatattccagtcgaagagttacttaaacgctatgct
ttggagaatgttagtagagaaaatactccagaaaataatggagctgacctgacagttgag
gatggagatcatgatgagagcaaaggaaaagatcattctgctgtcagtgaccctgaaatg
agctgctcgcctgttaatactggtcgtcgttgtggtgaagaaaatggtgccatggtcacg
tcagagatccatttatcagaaattgagatgggtgaaaccagaaaccaatcagatgttact
ggtgatctgaccaaagacctactatatgattccaacgaggaacaggaagatggtgatttt
gttcttgctaatggagaagaaaaggaacatgagatggatgatgagacaaccttgttagag
gaggaagaacttgcaaaagctgatccaagcaataccatggatgagattctattgctgcaa
aaagagagtgaaattcctttggaagaattgcttgcaaggtataaaaaggagatcaacaat
gctgaagtttcagatgatgaatctggagctttatcagacaacttattggattccccagag
attaaagatgttgaactgaagcagcaggatgcgtccatggatgaaaatgttgaacctggt
gaattgttaccagttgaacatcatcttgtaaatgaacaagaagcagcaattgggaaaact
cctgaagaaggaaatgacagtgagaataggattgctgatgctgctgctgctgcaagatct
gcacagccaacaggaaatacattttcaacaaccaaagtgcgcacaaaattcccttttctt
cttaagtatccacttcgtgagtatcagcatattggcttggattggcttgtaacaatgtat
gagaaaaggttaaatgggattctagctgatgaaatgggacttggaaagacaataatgact
attgctttacttgcacacctggcctgtgagaagggaatatggggtcctcatctaattgtg
gttccaacaagcgtcatgctaaactgggaaacagaatttcttaaatggtgtcctgccttt
aagattcttacttactttggaagtgctaaggaacgtaaattaaagagacaaggttggctg
aaaccaaacttcttccatgtatgcatcacaacttacaggctggttatacaggattcaaaa
gtcttcaagaggaagaagtggaaatacttgattttggatgaagctcacctgattaagaat
tggaagtcccagagatggcaaactcttcttaacttcaattcaaaacgacgcatcttatta
actggtacacccttgcagaatgatctcatggaactctggtctctaatgcatttcttgatg
cctcacatctttcagtctcaccaggagttcaaggattggttctgcaatccaatatcaggg
atggtagagggacaagaaaaagtaaacaaagaagttgttgatcgtctgcataatgttctt
cgtccatttatacttcgtcgactgaaaagggatgtggagaagcagctgccaatgaaacat
gaacatgtcatctattgtaggctctcaaagaggcaacgtaacttgtatgaggacttcatt
gctagctcagagacacaagcaactcttgccagtgctaacttttttgggatgattagcatt
ataatgcaacttcgtaaagtctgcaatcatccagacttatttgagggtcggcctattatt
agttcttttgatatggctggtatagacatccagttgagttcttctgtatgtgcaatgctt
tcacttgatccattttcaactgttgacctttatggtttgggacttttatttactcatctt
gattttaacatgagttcttgggagtttgaagaagtaaatgctattgtgacaccttcaagc
ttaatcaaagagcgtgccaacctggataacttggaagaaattgggtcacaaactaaacat
cataaggagttaactggaacaaatttttttgaagagataaggaaggcagtgcttgagcag
aggctaagagaagtgaaggaacgggcagcttctattgcatggtggaattcattgaggtgc
cggaaaaaacctatgtactcgactacctttcgagaacttgtcaccataaagaatcaggtg
catgatattcatcgccaaaaggctgatcagctcacttatttgtactcttctaagctcgct
gatattattctttcacccgttgaacacttccagaagatgattgatcttgttgagtctttt
atgtttgccatacctgcagcacgtgcaccagtgccaatttgttggtgcagtaaaacaaga
acttctgtgtttctccatccaacttataaggagaaatgctcagaaatgttgttgcctatt
ctttcacctattagacctgcaattgtcaggagacaagtatattttcctgacaggcgattg
atacaatttgactgtggtaagttgcaggaacttgcagttttactacggaagttgaaatca
ggaggtcaccgagcattgatattcacccagatgaccaaaatgcttgatttattggaggct
ttcataaatttgtatggttacacttacatgcgtttggatggatccactcaaccagaggag
agacaaacattaatgcagcgattcaacacaaatcccaagatttttctcttcattttgtca
acccgtagtgggggtgttggtatcaatctttttggagccgatacagttatcttttatgac
agtgactggaatcctgcaatggatcaacaagctcaagatcgctgccatcgaataggacag
acacgtgaagtgcatatctataggttaatcagcgagagcactattgaggagaacatctta
aagaaagccaatcagaagcgagctcttgatgatttggtcatacagagcggaggttataac
actgagtttttcaagaagcttgatcctatggaattattctctggtcataaagctcttcca
ataaaaaatggacagaaagagaagaataatggccatgcaaatgaggtttccttgtctaat
gcagatgtggaggctgctttaaaatatgcagaagatgaagcagattatatggcattgaag
aaagttgaacaagaagaagctgtcgacaaccaggaattttcagaagccattggaagattg
gaagatgatgagtttgttaatgatgatgatatgaaggctgatgagcccactgagctggag
atgacaactcaaagtaaagacactggtgtgaatataaatatgaaggagcccattgaagaa
aaaactataacttttgctggtaatgaagatgatgttgacatgctggctgatgtcaaacag
atggctgcagcagcagctgctgctggacaagctatcttaacgttggagaatcagctacgt
cctattgaccgatatgcagtacgttttcttgaagtgtgggatccgataatagacaaagca
gctatggaatctgaagttcaatttgaggaggcagaatgggaactagatcgtattgagaaa
tacaaagaggaaatggaagctgagattgatgatgatgaggaaccattgttatatgaaaga
tgggatgctgattttgcaacggaggcataccgacagcaagttgaggccctggctcaacat
cagttgatggaagagctggaagctgaagctaatgagaaggaagatgccgatgatggatat
tgcgatagcatgatgaatgaaatggcaagcaatactaagcccaagtccaaaaagaaacag
aagaaagccaagttcaaatctctgaagaaaggatctcttacttctgaactgaaacatgtg
aaagaggaaccatcaatagaaactatgtctttagatgaagatgcagttggaatatattat
gaagaaggtgcttattcggacatgacatcacaatacccaagtgtgcagaaaaaacgcaag
aaagttgaaacagtttatggtgaatctggaaagagctcaaagaagaagtctaagaaattg
aaggcgacttctgaaacctgcctatcagatctagattcaagcctgtctggtaagcagcaa
gatgaatctgtagaactaaaaccatgtgagaacatggttgctgatcatgagcagaggcaa
gcaggcagaagtaaaatgggaggaaggatctccatcaccgccatgcctgtgaagcgggtc
ttgatgattaagccagagaagttaaagaaggggaatttttggtcaagagattgtgttcca
tcacctgattcttggttgccacaggaagatgcaatattatgtgctgtagtgcatgaatat
ggtccgcattggagcttggcctgtgaaacattgtatgggatgactgctggtgggttttat
aggggaagatatcgccatccagttcattgttgtgagagatatagggaactaattcaaaga
tatgtcttgtctgcgccagaaaatcatttcagtgaaaagacgagcagtgcaggctctgga
aaggccctcctcaaagtaactgaggataatattcagatgcttctaaatgttgctgcagag
cagcctgatcacgagttacttctccagaggcacttcactgccgtgctttcttctgtatgg
aggatgacatcacgtgctgatcgccaacaaaatctttcatctagaaatggcatctatttt
ggtggaaagtttttcaactctttcaatcagatatcttggaattcagtcaaagaacctgca
aaaagaatgagattcactacctcagcacagagttgcaagttgttggctgctgcactgcat
gaattcaacagtagaccgctggatgatgcagtctccatttctaaccggattgaagatact
ccttgtttttctgaacagttagaagtaacattggaatttgaaaaggaggaaggtgattta
tcaattccattgccacctatcataaatttgacaatacctatcacagacccacaaaatttc
agaatcaaggatgttggagaacataatctcaaagctgtgacaaatgtggctgaaagtcga
ttcagggatgcagcaagagcttgctttgaaggccgtccgggttgggcatcatctgcattc
ccagcaaatgatttaaagttgcgggcagcttcaaaaccacagtccttggggaagcacaag
ctctctgtctccgactcaaagccacctagatctaaattgaagaaaacatcggagcgtggt
gagatgcataatttgtttgcggagccagcattgcaaccactatcgacagtttcttccagg
gaccccaatttaaggtttgaccttactccagctatcattcaggatggatggatgattgat
agagacagttgttctatttctttttgggatgaggaacttccaggggaatttgccagcttt
aaatccatacctcatgattatgatgctgatttaatctctggcctagatgatttttcattg
ttgcctgaatatactgatattgggtag
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integrated database retrieval system
