Manihot esculenta (cassava): 110602038
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Entry
110602038 CDS
T05761
Name
(RefSeq) RNA-binding protein CP29B, chloroplastic
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03013
Nucleocytoplasmic transport
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110602038
03015 mRNA surveillance pathway
110602038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110602038
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110602038
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
Nup35_RRM_2
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
110602038
NCBI-ProteinID:
XP_043807305
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All DBs
Position
15:complement(14441527..14444392)
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AA seq
479 aa
AA seq
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MVKPKRGCLPPSGSGSGSLSRSRSKSRSRSYSGSDSRSSSRSWSLSSRSRSKSFSSSSSP
SRSLSSVSRSPTAQRKSSAVVAKRGRSPHLQSRKTSPPRKISPIRESLVLHIGSLSRNVH
EGHLKEIFSNFGEVVHVELAIDHTVNLPKGYGYVEFKARADAEKALIYMDGTQIDGNFVR
ARFTLPPRQGVSPPPKPIAAGLVTPPTSFFLMDSFSLSLAFFFSFCFLSAVVGFVSMVKP
KRGRSPPSGSGSGSLSRSRSKSRSRSYSGSDSRSNSRSWSLSSRSRSKSFSSSSSPSRSL
SSVSRSLTAQRKSSSIVAKNVHEGHLKEIFSNFGEVVHVELAIDHTINLPKGYGYVEFKA
RADAEKALIYMDGTQIDGNFVRARFTLPPRQGVSPPSKPIAAGLMAPFDNSQSPWAPSPI
DLVLPRPLLYGSDSFLGSLMGLVSDWAYSPIGLVLVSGPDCPGLLAQARKVRPSFERMG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagccaaagcgaggttgtttgccgccttccggttctggctcgggttcgttgtcc
aggtcccgctcgaagtcacgatcacgctcttactctggttcagattctcgctccagctca
cgctcctggtctttgtcctcccgatctcgttccaaatcgttctcttcatcctcctcccct
tctcgcagcctcagctccgttagccgcagccctactgctcagagaaagagttctgctgta
gtggctaagcgaggtcgttctccacacctgcaatctagaaaaacttctccgccaaggaag
atttctcccattcgtgagtctcttgttcttcacattggctcactcagcaggaatgtgcac
gaaggccatttaaaagagatattcagtaactttggtgaggttgtacatgtggagctggca
attgaccatactgttaatcttcccaagggatatggatatgttgaattcaaggcaagggct
gatgctgagaaggccttaatatacatggatgggacccagattgatggcaattttgttcga
gcaaggttcacattacctccgcgacagggggtttcaccacccccaaaacctattgctgcc
ggcctcgtaaccccaccgacctcctttttcctcatggactccttttctctttctctcgcc
ttcttcttttctttctgtttcttgtcagctgttgttggctttgtatccatggtgaagcca
aagcgaggccgttcgccgccttccggttctggctcgggttcgttgtccaggtcccgctcg
aagtcacggtcacgctcttactctggttcagattctcgctccaactcacgctcctggtct
ttgtcctcccgatctcgttccaaatcgttctcttcatcctcctccccttctcgcagcctc
agctccgttagccgcagccttactgctcagagaaagagttcttctatagtggctaagaat
gtgcacgaaggccatttaaaagagatattcagtaactttggtgaggttgtacatgtggag
ctggcaattgaccatactattaatcttcccaagggatatggatatgttgaattcaaggca
agggctgatgctgagaaggccttaatatacatggatgggacccagattgatggcaatttt
gttcgagcaaggttcacattacctccgcgacagggggtttcaccaccctcaaaacctatt
gctgccggcctcatggcgccatttgataactctcaatctccctgggctccatctccaata
gatctggttctccctcgtcccctattatatggatctgattcctttttgggctctctgatg
gggttggtgagtgattgggcctactcccctattggacttgtgctcgtatctggtccggat
tgccctgggttgctggcccaggctcgtaaagtcaggccatcttttgagcgtatgggttga
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