Manihot esculenta (cassava): 110602237
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Entry
110602237 CDS
T05761
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc00040
Pentose and glucuronate interconversions
mesc01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
110602237
Enzymes [BR:
mesc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
110602237
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
110602237
NCBI-ProteinID:
XP_021595394
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Position
15:complement(3779063..3783338)
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AA seq
450 aa
AA seq
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MAMALPSKWVCVCATVLVVMFVGVAATVRNDEISGLTRNVETEKSQSSNNSSTAASAAEV
TEGWKNERAVDDPEEVVAMVEMSIRNSTERRKLGYFSCGTGNPIDDCWRCDPNWQKNRKR
LAECGIGFGRNAIGGRDGRFYVVTDPSDDDAVNPKPGTLRHAVIQDEPLWIVFKRDMVIQ
LKQELIMNSFKTIDGRGVNVHIANGGCITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSH
FGWRTMADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVMLL
GHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTI
NSQGNRYNAPVNPFAKEVTKRVETAASQWKSWNWRSEGDLLLNGAYFTPSGAGASASYAR
ASSLGAKSSTMVGSMTANAGALPCRRGSRC
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggcgttgccttccaagtgggtttgtgtttgtgcgactgtgcttgtggtgatg
ttcgtcggagttgcagctacggttcggaacgacgagatctctggccttaccaggaatgtg
gaaacagagaaatcccagagctccaacaactcatcgacggcggcgagcgctgcagaagtg
accgagggatggaaaaatgagcgtgcagttgatgaccctgaagaggtggttgccatggtg
gaaatgagcatccgcaacagtactgaaagaaggaagcttggatatttctcatgcggtact
ggaaatccaattgatgattgctggcgctgtgaccccaactggcagaaaaaccgcaagcgc
cttgctgaatgtggaattggtttcggcagaaacgccatcggaggccgcgatggtcgcttc
tatgttgttactgatcccagtgatgatgacgctgtcaatccaaagcctggcactttgcgt
cacgctgtgatccaggatgagcccttgtggattgttttcaaaagggacatggtgattcaa
ttgaagcaggaacttatcatgaacagcttcaagactattgatggccgtggggtcaatgtc
cacattgctaatggagggtgcatcaccatccaatttattactaatgtgatcattcatggt
ctccacattcatgactgcaagcccactggtaatgcgatggttaggagctcacccagtcac
tttgggtggaggacaatggcagatggtgatgccatctctatttttggatctagccacata
tggattgaccataattcgctctctcattgcgctgatggcctggttgatgctgtcatgggt
tcaacagccattaccatctccaacaaccacttaactcaccacaatgaggtgatgctattg
ggtcacagtgattcctacacaagagacaagcaaatgcaagttaccatagcgtacaaccat
tttggagagggactcatccagagaatgccaaggtgcagacatggatacttccatgtagtg
aacaatgattatacacactgggagatgtatgccattggtggaagtgcaaatcccaccatc
aatagccagggcaacagatacaatgcaccagtcaacccttttgcaaaggaggtgacaaag
agggtggagacagctgcaagccaatggaagagctggaattggaggtcggagggtgacctt
ttgctgaatggcgcttattttactccctctggagctggagcttcagctagctatgctcgt
gcttcaagcttgggtgccaaatcttctaccatggttggatcaatgactgctaatgcaggc
gctcttccatgcaggaggggaagccgatgctaa
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