Manihot esculenta (cassava): 110602248
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Entry
110602248 CDS
T05761
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
KO
K14411
RNA-binding protein Musashi
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110602248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110602248
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110602248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
AXE1
Motif
Other DBs
NCBI-GeneID:
110602248
NCBI-ProteinID:
XP_021595410
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Position
15:4847023..4851317
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AA seq
479 aa
AA seq
DB search
MESDLGKLFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRTTGRARGFGFVVFTDPAVA
ERVIMDKHMIDGRTVEAKKAVPRDDQHILNRNASSIHGSPGPGHTKKIFVGGLASTVTDS
DFKKYFEQFGNITDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLHKTFHELNGKMVEVKR
AVPKELSPGPSRSPLIGYNYGLSRTNNFLNAYAQGYNMSSVRGFGMRMDSRFSPLASGRS
GFPTFGTTGYGMGINLEPGLSPSYGGAANFGNSPGYGRILSPYYNGNSSRYSTPIGYGVG
NARNDSVLSPTRRNVWGNGSPNTAANPPSPGAFLGSGSGNFGVSFGNSGANWGPSHVSAQ
GGGSASGYTSGSMGYGSAGDSSYGLGGGGYGRNSSTGAAPNSSFAGSTGVYEGAYGDLYR
GGSVYGDSTWRPGTPELDGAGSFGYGLGNIASDVTTKSSDGYIGSYGVTSRQSNRGIAT
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagatcttggtaagctattcattggtgggatttcttgggacactgatgaggaa
cgtctgaaggagtacttcagcaagtatggggaagtggtggaggcggtgatcatgcgagat
agaactacgggccgtgcccgtggctttggattcgtggtcttcacggatcctgctgttgcg
gagagggtcattatggataagcacatgattgatggacgcacggttgaagcaaagaaggct
gttccaagggatgatcagcacattttgaataggaatgctagtagtattcatggttctcca
ggtcctggacacaccaaaaagatttttgttggaggtctagcttctacagttacagacagt
gactttaagaagtactttgagcagtttggcaatatcactgatgttgttgtgatgtatgat
cacaacacacagaggccaagaggctttggcttcatcacttatgattcagaggatgccgtt
gacagagttttgcataaaacatttcatgaacttaatggtaaaatggttgaggtcaagagg
gcagtcccaaaggagctatccccagggcctagtcggagccctctgataggatataactat
ggtttgagtaggaccaacaacttccttaatgcatatgctcagggatataatatgagctca
gttagaggttttggaatgaggatggatagtaggtttagtcctcttgccagtggtcggagt
ggatttcctacatttggtactactggttatggaatgggtatcaatttagagccagggttg
agcccaagctatggtggggctgctaactttggcaatagtccaggctatgggcggatttta
agtccctattacaatgggaattcaagcaggtatagtactccaataggttatggtgtggga
aatgcaaggaatgattctgttctaagcccaactagacgtaatgtctggggaaatgggagt
cctaatactgctgctaatcctcccagccctggtgctttcttgggttctggaagtggaaat
tttggagtttcatttgggaatagtggagccaactggggcccttctcatgtttcagctcaa
ggtggtggaagtgcttctggttatactagtgggagcatgggctatgggagtgctggtgat
agcagctatgggttgggaggaggagggtatggaaggaacagcagtactggtgcagcacca
aattcatcatttgctgggtcaactggtgtttatgaaggggcctatggggacttgtaccgt
ggtggttcagtttatggggattcaacttggcggcctggcactcctgagctagatggtgct
ggttcatttggttatggacttggcaatatagcttcagatgttactactaaaagttctgat
ggttatattggcagttatggagttacaagtagacaatctaatagaggaattgctacctag
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