Manihot esculenta (cassava): 110602856
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Entry
110602856 CDS
T05761
Name
(RefSeq) E3 ubiquitin-protein ligase ATL42
KO
K10664
E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:
2.3.2.27
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mesc04121
]
110602856
Enzymes [BR:
mesc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110602856
Ubiquitin system [BR:
mesc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
ATL proteins
110602856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-rbx1
zf-C3HC4
zf-ANAPC11
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-RING_16
zf-Nse
Prok-RING_1
zf-RING_10
zf-RING-like
zf_RING_Vps8_fungal
Zf_2nd_IFT121
FANCL_C
RINGv
zf-RING_4
zf-RING_6
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
110602856
NCBI-ProteinID:
XP_021596131
LinkDB
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Position
16:complement(27516671..27518483)
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AA seq
406 aa
AA seq
DB search
MNKSGVFLIILCFFFFFHVEAQNTLNSHSGLLNPLHPSLVAVILIISIMLSATFLIFAYA
KFCHRNTADDQNFLGLSRSRSRFSGIDRAVIDSLPFFRFSSLKGSKQGLECAVCLSTFEE
SEILRLLPKCKHAFHKNCIDQWLQNHSSCPLCRYKFDPMDLKSFSFSNSWRFLQNPSNLT
EDPNVEIFVQREQNYHGSSRFNLGTNDKEEEFLLVQEGGKNQKLLHKFKHRIIVSDVIIK
NRWSDVNSSDLLSLNSEMLNFLSSNRFSPSNSSSSAGISMKENIEKIKEDIERKRFYESK
ISKADKSDSFSSSNVPSTSFQEESSRKIINPGEKRSMSEITICSRFKELNLKNKIKESAV
SPNRSDEQEHRIRKLWLPMARRTVQWFAGGERNLQELEYNRQTSNV
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatcgggagtgttcctcataatcctctgcttcttcttcttcttccatgtcgaa
gcccaaaacacattgaattctcattcgggtctcctcaatccactccatccaagtcttgta
gctgttattctcatcatctcaattatgctctctgcaacttttctcatctttgcctatgca
aaattctgtcacagaaacacagctgatgatcaaaattttcttggtctcagtcgttcaagg
tctagattttctggcattgatagagctgtgattgattcgcttcccttcttcaggttttct
tctctcaagggttcgaaacaaggcttagaatgtgcagtttgcttatcaacattcgaagaa
tccgagattcttcgattgttgcccaaatgtaagcatgcatttcacaagaactgcattgac
cagtggctgcaaaatcactctagctgtcctctatgcaggtacaagttcgatccaatggat
ctcaagagcttcagcttttcaaatagttggagattcttacagaatccttccaatctaact
gaggatcctaatgttgaaatctttgtccagagagagcaaaattatcatgggtcatcaaga
tttaaccttggaaccaacgacaaagaagaagaattcttgcttgttcaagaaggtggtaaa
aaccagaaacttctgcataagttcaagcacaggatcatcgtctctgatgttattatcaag
aaccgatggagtgacgttaattcctcagatttgctgtccttgaattctgagatgctcaat
ttcctgtcaagcaacaggttctcgccttcaaattctagcagctctgcaggaatctccatg
aaagaaaatatagaaaaaatcaaagaggacatagagaggaagagattctacgagtccaag
attagcaaagctgacaaaagtgattcattttcaagttcaaatgtaccctctacttctttt
caggaagaaagttcgaggaaaataattaatcctggagagaagagatcaatgtctgagatt
acaatctgttcaaggttcaaagagttgaatctgaagaacaaaatcaaagaatctgctgta
tctccaaatcgtagtgatgaacaggaacacaggataaggaagctttggttaccgatggca
aggagaacagttcaatggtttgcaggtggagaaagaaacttacaagagctagagtacaac
agacaaacatcaaacgtatga
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