KEGG   Manihot esculenta (cassava): 110603037
Entry
110603037         CDS       T05761                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    110603037
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mesc03021]
    110603037
Enzymes [BR:mesc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     110603037
Transcription machinery [BR:mesc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     110603037
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 110603037
NCBI-ProteinID: XP_021596379
LinkDB
Position
16:33065152..33071608
AA seq 1204 aa
MKESMDDMEEDMGTSSKGEKLPNEFDMEIDFDGDDDEDDGEFMDLTSLGDLGEGFLEDFC
KKAATLFFNEYGLISHQINSYNDFIHNGLQMAFDSFDDLVVEPGYDPSKKGENEWRYASV
RFGKVTVDRPSFWAGSDGGEHNMFPRHARLQNMTYSARMKVNVTVEVYTQKVVSSDEFRT
GKDHFVDKVVLSTDSRDIIIGRMPVMVKSDLCWMQTVEKGDCDFDHGGYFLIKGAEKVLI
AQEQSCLKRLWISNTQGWTVAYKSEVKRNRLIVRLEPVGPSKDENLKEGKKGLTVYFLST
EIPLWILFFALGIKSDKEVIDLIDYNMEDASIMNIIFGSIHDADDKCEGFRKERNALDYL
VKQIQGTKFPPGEDEDCISLYLFPTLHSPRQKARFLGYMVKCLLQAYSGKRKCDNRDSFR
NKRFELAAELLDRELKVHIAHARRRMSKVLQKDLYGDRDVRPIEHYLDASIVTNGLSRAF
SSGAWSHPFKRMERISGVVANLGRTNPLQTMVDLRKTRQQVLYTGKVGGARYPHPSHWGR
VCFLSTPDGENCGLVKNLAATGLVSTNISEPLIDILFDCGMEKIVDDAHTKLNGKHIVFL
NGEWVGVCEDSHLFVTELRRLRRRKRLPQQVEIKRDDQQREIRIFSDAGRILRPLLVVEN
LTKIKAFKGGNYTFQSLLDKGIIEFVGTEEEEDCNTAWSVKLLLAGADGKQPVQYTHCEL
DMSFLLGLSCGIIPFANHDHARRVLYQAQKHCQQAIGFYTTNPNIRVDTVSHQLHYPQRP
LFRTVTSDCLGKSRHQRGYNGMLPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRSSLERG
LFRSEHSRSYKADVDNKELLDKWRKFDDTINFGKVQSKFGRVDSLDDDGFPFIGANLQSG
DIVIGRCAESGADHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPSLGDKFSSM
HGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSMRY
ATPFSTLSVEAITNQLHRAGFSRWGNEKVCDGRTGEMVHSLIFMGPTFYQRLIHMAEDKV
KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASGNLHERLFTLSDSSQMHVC
QSCKNVANVIQRGVRGGHKIRGPYCRICESADDIVKVNVPYGAKLLYQELFSMGINLKFE
TQLC
NT seq 3615 nt   +upstreamnt  +downstreamnt
atgaaggagtcgatggatgacatggaggaagatatgggcacgagtagtaagggtgagaag
cttccaaatgaatttgatatggagatagattttgatggcgatgatgatgaagatgatggt
gagtttatggacttaactagcttgggcgatttgggggaaggttttctcgaagatttttgt
aaaaaagctgcgaccttgttctttaatgagtatggtctcattagtcaccagatcaactcc
tacaatgacttcatccacaatggtcttcagatggcctttgattcctttgatgacttggtt
gttgaacctggatatgacccatctaagaagggagaaaatgagtggcgatatgcttcagtt
aggttcggaaaggtcacagttgatagaccaagtttttgggctggttccgatggtggtgaa
cacaatatgttccctaggcatgcgaggcttcagaatatgacgtattcagccaggatgaaa
gtgaatgttaccgtagaggtctacacccagaaagttgttagcagtgatgagtttagaact
gggaaggatcattttgttgacaaggtggttctaagtactgatagtagggacatcataatt
gggaggatgccggtaatggtgaagtctgacctatgctggatgcaaactgttgaaaaaggt
gattgtgattttgatcatggaggttattttttgatcaagggggcagagaaggttttaatt
gcacaagagcaaagttgtttgaagagactttggatctcaaatactcagggatggacagtt
gcatacaagtctgaagttaaaaggaatagattaattgttagattagagccagtggggcct
tctaaagatgaaaaccttaaagaaggaaagaaaggccttactgtgtatttcttgtcaaca
gagatccctttatggatattgttttttgctcttggaatcaagtcagacaaagaagttata
gatttgattgattataatatggaggatgccagtattatgaatatcatttttggctctatc
catgacgctgatgacaaatgtgaggggtttcgtaaggagaggaatgctcttgattatcta
gttaaacaaatacaaggaaccaaatttcctccaggggaagatgaagattgcattagtctg
tatctgtttcccactctccatagccctaggcaaaaggcccggtttctaggttatatggtg
aagtgtcttttacaggcatatagtggcaaaagaaaatgtgataacagggacagttttaga
aacaagagatttgagttggctgctgagttgctagaccgagagctaaaagtacacatagca
catgcaaggaggcgcatgtccaaggttttgcagaaagacctatatggagatcgtgatgtt
cgcccaattgaacattatctggatgcttctatagtcaccaatggtctatcaagagcattc
tcatctggggcatggtcacatccatttaagaggatggagaggatatctggtgttgtggca
aatctggggcgtacaaatcctttacaaacaatggttgatttgcggaaaacaagacaacag
gttctgtacacggggaaggttggaggcgcaagatatccgcacccttctcactggggtagg
gtttgctttctttctactccggatggtgaaaattgtggacttgtaaaaaatctggctgct
acaggacttgttagcacaaacatatctgaacctctaattgatatattgtttgattgtgga
atggagaaaattgttgatgatgcccacactaaactgaatgggaaacatatagtatttctg
aatggggaatgggtaggagtttgtgaagattcccatttgtttgttaccgagcttagacgt
ttacggcggaggaagcggttgcctcaacaggtggaaatcaaaagagatgatcaacaaaga
gagatacgcatattttctgatgctggaaggattttacgtccccttttggttgttgagaat
ttaactaagataaaagcttttaaagggggaaattacaccttccaatctcttttggacaag
ggaattattgagtttgttggaactgaagaggaagaagattgcaacacagcatggagtgta
aaacttcttctagcaggagctgatggcaagcaacctgtgcagtacacacactgtgaactt
gacatgtccttcttattgggtttaagttgtggaatcattccctttgccaatcatgaccat
gcaaggagagttctataccaggctcaaaagcattgtcagcaggctataggtttttacaca
acaaatcccaacatcagggtggacaccgtgtcgcaccaattgcactatccccaaagacca
ctttttcgtacagtgacttctgattgtcttggaaaatctagacaccaacgaggttataat
ggaatgctgccaaaacctgagttatataatggtcagaatgctattgtggcagtcaatgtt
catctaggatacaatcaagaggactccttggtaatgaatcgctcttctttagagcgaggc
ttgtttcgatctgaacatagcagaagttacaaggctgatgttgataataaagaactatta
gacaagtggcggaagtttgatgatactataaattttgggaaggtacagagtaaatttgga
cgtgttgacagccttgatgatgatggttttcctttcattggtgctaatctacagagtggt
gatatcgttattggaaggtgtgctgaatctggagctgatcatagtataaaattgaagcac
actgaaaggggcatggtccagaaagttgtattgtcttctaatgatgagggaaagaatttt
gctgtggtgtctctaagacaggttcgttctccatctcttggagataagttttctagcatg
catggacaaaagggtgttctaggctttttggagtctcaagagaacttccctttcaccaga
cagggaatagttcctgatattgttataaacccacatgcatttccttcaagacaaactcct
ggtcaactcttagaggctgctttggggaaggggattgcctgcgggggctcaatgagatat
gccaccccgttctccacactctcagttgaagcaatcacaaaccagcttcacagagctgga
ttttcaagatggggaaatgagaaagtttgtgatggtcgaaccggtgaaatggttcattct
ctcatatttatgggtccaactttctatcagcggttgatccacatggctgaagacaaggta
aagttccgtaacactgggcctgttcacccacttactagacagccagttgcagaccgtaaa
cgttttggtggtatcaagtttggtgagatggagagggactgtcttatagctcatggtgca
tctggtaatctgcatgagcgccttttcactctcagtgattcttcacagatgcatgtttgc
cagagttgcaaaaatgtagcaaacgtgattcaacggggagtgcgtggtggccacaagatt
aggggtccctactgcagaatctgtgagtctgctgatgacatagtaaaggtgaatgtacct
tacggagccaagttattgtaccaagagctcttcagcatgggtattaatctgaagtttgaa
actcaattatgttga

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