Manihot esculenta (cassava): 110603371
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Entry
110603371 CDS
T05761
Name
(RefSeq) protein CTR9 homolog isoform X1
KO
K15176
RNA polymerase-associated protein CTR9
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110603371
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
110603371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_8
TPR_19
TPR_14
TPR_16
TPR_17
TPR_11
TPR_CcmH_CycH
TPR_6
TPR_9
TPR_7
TPR_10
ANAPC3
ARM_TT21_C
RPN7
ARM_TT21_5th
TPR_Slam
NatA_aux_su
Motif
Other DBs
NCBI-GeneID:
110603371
NCBI-ProteinID:
XP_043807565
LinkDB
All DBs
Position
16:complement(30223273..30237206)
Genome browser
AA seq
1096 aa
AA seq
DB search
MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR
QILEEGSSHEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEYFIQATKYYNKA
SRIDMHEPSTWVGKGQLLLAKGELEQASNAFKIVLEGDRDNVSALLGQACVEYNRGHYSD
SLASYKRALQVYPNCPGAVRLGMGHCYYKMGHTKKAWQAFERVLQLDPENVEALVALAIL
DLQTNEAAGIRRGVEKMQKAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
GPTKSHSYYNLARSYHSKGDYETASRYYWASVKEINKPSDFVFPYYGLGQVQLKLGDIKN
ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQTEKSLELLRKATKIDPRDAQAFLDLGELL
ISSDTGAALDAFKTAYGLLKKGGQQVPIEVLNNIGVIYFEREELTLALETFKEALGDGIW
RAFLDGQAKTYAVDAAASIFQYKDVQLFHRLQEDSFVVELPWDKVTPLFNLARLLEQMHS
TETASVLYRLILFKYPDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNDKCPNALSMLG
DLELKNDEWVKAKETFRAASEATDGKDSYAILALGNWNYFAAIRNEKRNPKLEATHLEKA
KELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFTQVQEAASGSIFVQMPDVWINL
AHVYFAQGNFALAVKMYQNCLRKFYNNTDSQILLYLARTHYEAEQWQECKKTLLRAIHLA
PSNYILRFDAGVAMQKFSASTLQKTKRTVDEVRSTVDELENAVRLFSQLSASSNLQFHGF
DEKKINTHVEYCKHLLEAAKVHREAAEREEQQNRQRQEVARQMALAEEARRKAEEQRKFQ
LERRKQEDELKRVRQQEEHFERVKEQWKSSTPGSKRRDRSEMDDDEGANSEKRRRKGGKK
RRKEKSSKSHYEMEETEADMMDDQEELEDEDVNVNDGEHRNQRNDHDENENAEENAQELL
AAAGLEDSDAEDEAKPAPATSRRRRAWSESDDEEVLERKPQSSPVQENSTELQESDGEIR
EDVDKQHGDAVVDDED
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggtgtacattccggtgcagaactcggaggaggaagtgagagtggctctagat
cagctccctagagacgcctccgatatcctagacatcctcaaagccgagcaagcccctctc
gacctttggcttattatcgcgagggaatactttaaacaagggaaacttgaacagttccgc
cagatactggaggaaggatccagtcatgagattgatgaatattatgctgatgttagatac
gagaggattgccatcctaaatgctttgggggcttattatagctatcttgggaaaatcgag
acaaaacagagagaaaaggaggaatattttatacaggctactaaatactacaataaagct
tcaaggattgacatgcatgagccttctacatgggttgggaaaggtcaactattactagcc
aaaggtgagttagaacaggcatctaatgcatttaagatcgtactggagggagaccgtgat
aatgtatctgctcttttgggtcaggcatgtgttgagtacaatcgtggtcattacagtgat
tctttggcatcatacaagagggcattgcaagtgtatcccaattgtcctggagctgtaagg
ctgggtatgggtcactgctactataaaatgggccatactaaaaaagcatggcaagcattt
gaacgggttttgcagttagatccagaaaatgttgaagctcttgtagcccttgcaattttg
gatttgcaaacaaatgaagccgctggaataaggagaggggtggaaaaaatgcagaaagct
tttgagatatatccctactgtgcaatggcactgaattatctagcaaatcactttttcttt
actggtcaacacttcttagttgagcaactgactgaaactgcacttgctgtgaccaatcat
ggaccaacaaagtcacactcttactacaatttagcacgctcttaccatagcaagggggac
tatgaaacagcttcaaggtactactgggcatctgtgaaggaaatcaataagcccagtgat
tttgtttttccatattatggattgggccaagtacaactaaagctcggagatattaaaaat
gcactatcaaattttgaaaaggttttggaggtctaccctgataattgtgagacattgaaa
gtgcttgggcacatatatgttcagcttgggcagactgagaaatctctagaacttttgaga
aaagctacaaaaattgatccacgtgatgcacaggcatttctcgatctgggggaattgtta
atttcatctgatacaggagctgctcttgatgccttcaaaactgcatatggtcttctgaaa
aagggaggtcaacaagtgccaatagaagtgcttaataatattggagttatttattttgaa
agagaggaacttacgcttgctttggaaactttcaaggaggctctaggtgatggtatatgg
cgtgctttccttgatggtcaagcaaagacctatgcagttgacgcagctgcatctattttc
caatacaaagacgtgcaattatttcatcgattgcaggaagatagctttgttgtagagcta
ccttgggataaagtcacaccgctgtttaacttggccagattacttgagcagatgcatagc
acagaaactgcaagtgtgttataccgtctcatattgtttaagtatccagactatgtggat
gcttacttgaggctggctgccattgcaaaagctcgaaataatcttcaattaagcattgaa
ctggttaatgaggctctgaaggtgaatgacaagtgtccaaatgcattgtctatgcttggt
gatttggaactgaaaaatgatgagtgggttaaggcaaaagaaaccttccgtgcagccagt
gaagcaactgatgggaaagactcttatgcaattctcgctctgggaaactggaactacttt
gctgcaatacggaatgagaaaagaaatcctaagttggaggccacccacttggagaaggcc
aaggaactgtacaccagagttctagttcagcatacagctaatctctatgctgccaatggt
gctggagtagtcttggcagaaaaaggacattttgatgtatcaaaagatctttttacacag
gtccaagaggctgcaagtggaagcatttttgtccagatgccagatgtgtggataaatttg
gcacatgtttattttgctcaaggcaattttgcattagctgtgaagatgtatcaaaattgt
ttgcgcaagttctataacaatacagactctcaaattctcctctacttggcacgtacgcat
tatgaagctgaacagtggcaggagtgcaagaaaactttactaagagccatccacttggca
ccttcaaattacattctaaggtttgatgcaggggtggcaatgcaaaaattctcagcatct
accctacaaaagacgaagagaacagtagacgaggtgcgctcaacagttgatgagctggaa
aatgctgttcgtttattcagtcagttatctgcttcttccaaccttcaatttcatgggttt
gacgagaagaaaatcaacacccatgttgagtattgtaagcatttattagaggctgcgaaa
gttcatcgtgaagcagctgagcgggaggagcagcagaaccggcaaagacaggaagtggct
cgtcagatggcattggctgaggaagcccgtcgtaaggccgaagaacaaaggaaatttcag
ttagagaggaggaagcaggaagatgagttaaaacgggtacggcaacaggaagagcatttt
gagcgtgtaaaggagcaatggaagagtagtacacctggttctaagaggagggataggtct
gagatggatgatgatgagggtgcaaatagtgagaagaggaggagaaaaggtggaaagaag
agaaggaaggaaaagagttctaagtcacactatgaaatggaagaaactgaggctgacatg
atggatgatcaggaagaactggaagatgaagatgtcaatgttaatgatggggaacacaga
aatcagaggaatgatcatgatgaaaatgaaaatgcagaagaaaatgctcaggaacttctt
gcagcagctgggcttgaagattctgatgcagaggatgaagcaaagcctgcgcctgcaaca
agtaggaggcgacgcgcatggtcagaatctgacgacgaggaggtattagagaggaaacca
cagtccagtcctgtccaagaaaattctactgagctgcaagagagcgatggagaaatcaga
gaggatgttgacaagcaacatggcgatgctgttgtggatgatgaggactga
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integrated database retrieval system
