Manihot esculenta (cassava): 110603617
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Entry
110603617 CDS
T05761
Name
(RefSeq) RRP12-like protein
KO
K14794
ribosomal RNA-processing protein 12
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mesc03009
]
110603617
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
90S particles
Other 90S particles
110603617
Pre-60S particles
Other pre-60S particles
110603617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_RRP12_N
RRP12_HEAT
TOR1L1_N
HEAT_GCN1
Nipped-B_C
DUF7097
4HPAD_g_N
Motif
Other DBs
NCBI-GeneID:
110603617
NCBI-ProteinID:
XP_021597104
LinkDB
All DBs
Position
16:complement(29778973..29788502)
Genome browser
AA seq
1279 aa
AA seq
DB search
MEGIEMEGSVIPTTDDLCDSILSRFSTSTQEDHQHLCAVIGAMSQELKEQNLQSTPIAYF
GAACSSLDRLSSSEPDPPPHVVDALLTIISLALPRISTAILKKKRELISEIVVKVLRLNS
LTVGAVTSGLKCIAHMLIIKDTVSWIDVSQLYGVLLGFIIDSRPKVRKQANTCLRDVLQS
FQGIPSLIPASEGITNTLERFLLLAGGSNTNETEGPRGAQEVLFVLDTLKECLPLMSMKC
KTTILKYYKTLLELRQPVVTRRITDSLNVICLHMTSDVSAEALLDLLCSLALSASTNETS
VDNLTFTARLLDSGMRKVYSLNRQICVVKLPLVFSTLKDILASEHEEAIFAAMEALKSLI
TNCIDEILIKQGVDQIKTNKNADGRKSGPTVIEKVCATIESLLDYHYSAVWDTVFQVVST
MFDKLGNYSSYFMKGTLKNLADMQGLSDEDFPYRKQLHECLGSALGAMGPETFLSLLPLN
LEADDLSEVNVWLFPILKQYTVGAHLSFFTEAILGMIGVIKQKSQKFELEGRVVSARSAD
ALVYSLWSLLPSFCNYPLDTAESFKDLEKALCSALREECDVRGIVCTALQNFVQQNKRIV
EGDDNLNVTEIGVARQQAMAHYSPQVAADNLSVLRSSAREFLTVLSGILLESSKDDGGCL
QSTISEFASIADKAVVKRIFLKTMRKLLDVTQKATKAKVSGNSNFMRIDDSSNEKSPSLE
RARLFDLAVSLLPGLDGQEIGVLFSAVKPALQDAEGMIQKKAYKVLSIIIQKYDGFLSSQ
LEELLQLMIDVLPSCHFSAKRHRLDCLYFLTVHVSKGDSEQRRRDILSAFLTEIILALKE
ANKKTRNRAYDVLVQIGHACGDEENGGNRENLYQFFNMVAGGLAGETPHMVSAAVKGLAR
LAYEFSDLVSTAYKLLPSTFLLLRRKNREIIKANLGFLKVLVAKSQSEGLQNHLGNMVEG
LLKWQDDTTNHFKAKVKHLIEMLIRKCGLDAVKAVMPEEHMRLLTNIRKIKERKERKTAG
NSEDARSQLSRATTSRLSRWNHTKIFSDFDDEETEDSDVEFMDTKTISGRKSKASSQLKS
KASSLRSKRMRKSDKSLPEDLFDQLEDEPLDLLDRSKTRLALRSSESLKRKQESDDEPEI
DSEGRLIIRERGRVKKDKPSDPDSDARSEAGTYVSDSSRKAQKRRKTTETGWAFTGNEYA
SKKAGGDLKRKDKLEPYAYWPLDRKMMSRRPEHRAAARKGMTSVVKMTKKLEGKSSSTAL
SMKLMRFKNQKKSNKRKNR
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcatcgagatggagggttctgtcatccctacaactgacgatctctgcgattca
attctctcgcgcttctccacctccacacaagaagatcaccagcatctctgtgcagtcatt
ggcgccatgtcccaggaacttaaggaacagaatctccagtccactccaatcgcttacttc
ggcgccgcttgctcctccctcgaccgcctctcgtcttccgagcctgaccctccccctcac
gtggtcgatgctctcctgaccattatctccctcgctcttcccaggatttcgactgcgata
ctgaagaagaaaagagaactcatatcggagatcgtggttaaggttttaaggttgaattcg
ctgacggttggtgcagtaacttcgggattgaaatgtatagcgcatatgttgattattaaa
gacacagtcagttggattgatgtttctcaattatatggtgttttattggggtttataatt
gattcgcgtccaaaggtgagaaaacaggcaaatacttgtttgcgcgatgttctacaaagt
ttccagggaataccatcgttgattcctgcaagtgaaggaattactaatacattggaaagg
tttcttcttcttgctggtggatcaaacactaatgagactgaagggcctagaggagcgcag
gaggtcctctttgtccttgatactcttaaggaatgtcttcctcttatgtctatgaagtgt
aaaactaccattcttaagtactataaaacccttcttgaactgcggcagccagttgtcaca
aggcgcataactgatagtttgaacgtaatttgtttgcacatgacttcagatgtttccgct
gaagcattgctagacctattatgctcattagctctttctgcctctacaaatgagacatct
gttgataacttgactttcactgctcggttactggattcagggatgagaaaagtttattcc
ttgaatagacaaatttgtgtggttaaactaccgcttgtatttagtaccctgaaagatatt
ttggcctctgaacatgaggaggccatctttgcagcaatggaggcattgaagagtttgata
actaattgcattgatgaaattttgatcaagcagggagtagaccagatcaagacgaataaa
aatgcagatggcagaaagtctggtccaacagtcattgaaaaagtgtgtgcaactattgaa
agcttacttgattatcattatagtgctgtctgggatacggtatttcaagttgtttcaaca
atgtttgataaattaggcaactattcttcatattttatgaaaggaacccttaagaacctg
gcagatatgcaggggttgtcagatgaagattttccttataggaaacagttgcatgaatgc
ctaggatctgcgcttggtgcaatgggccctgaaacatttttaagcctcctacctcttaat
ttagaggctgatgacctgtctgaggttaatgtttggctctttcccattttgaagcagtac
actgttggtgcccatttaagcttctttacagaggccattttgggtatgattggtgtgata
aaacagaaatctcaaaagtttgagctagaaggacgggttgtctctgcaaggagtgctgat
gcccttgtatactctttgtggtccttattaccttctttttgcaattatcctttggatact
gcagaaagttttaaggatcttgagaaagctttgtgtagtgctcttcgtgaagaatgtgat
gttcgtggaatagtatgcactgccttgcagaattttgttcaacaaaataaaagaattgtt
gaaggagatgataatttgaatgttactgaaattggtgttgctagacaacaagctatggcc
cactatagcccacaagttgcggcagataatttgagtgtgctaaggtcgtctgctcgtgag
tttttgactgttttgtcagggatcctcttggaatcttcaaaagatgatggtggctgtttg
cagtctacaattagcgagtttgcttcaatagctgataaagctgtagttaaaaggattttc
ttaaagacaatgcgaaagcttttggatgttacacaaaaggctacaaaggctaaagtttct
ggaaattctaattttatgcggattgatgattcatcaaatgaaaagtcaccatcacttgag
agggcacgactatttgatttagctgtttcccttttgcctggtttggatggacaagagatt
ggtgttttgtttagtgcagtaaagcctgcactacaggatgctgagggtatgatccaaaag
aaagcatataaagtcctttcaattattattcagaaatatgatgggttcctctcatcacag
cttgaggagttgctccaactcatgattgatgtcctgccttcctgccatttctctgcgaaa
cgacacagacttgattgtttgtactttctgacagtccatgtttcaaagggagattcagag
cagaggcggcgtgacatccttagtgctttccttactgaaataattcttgctctgaaagag
gctaacaagaagaccagaaatagagcctatgacgtgcttgtccaaattggtcatgcatgt
ggagatgaagagaatggtggaaacagggagaacttgtatcaatttttcaacatggttgct
ggaggcttggcaggagaaactcctcatatggttagtgctgcagtaaaaggcttagctcgt
ctagcttatgagttttcagatcttgtttctactgcttacaagttgcttccgtccacattt
ctcctcctaagaaggaagaaccgggaaatcattaaagctaatttaggttttctaaaggtc
ctggtggcaaaatcacagtctgaggggctgcagaaccacttggggaatatggttgaaggc
ttgctgaaatggcaagatgacactacaaaccatttcaaagccaaggttaagcatctgata
gaaatgctcatcaggaagtgtggtcttgatgctgtcaaggcagtgatgcctgaggaacat
atgagacttcttactaacatccggaagataaaggagcggaaagagagaaagactgcagga
aactctgaggatgcaagatctcagctatcaagggcaaccacatccaggttaagtagatgg
aatcatacaaaaatattttctgattttgatgatgaagaaacagaggacagtgatgttgaa
tttatggatacgaagaccatctctggtcggaaaagcaaggcttcctcgcagcttaagtcc
aaagcttcttcactacggtccaagagaatgcgcaaatcagataagagcttgccggaagac
ttgtttgaccagttagaagacgaaccactagatttgcttgatcggagcaaaactaggttg
gctcttcgatcatcagagtctctcaaaaggaagcaagaatcagatgatgagccagagata
gactctgaagggagattgataatacgtgaacgagggagagtaaagaaggacaagccatct
gatcctgattcagatgcgaggagtgaagcaggtacttacgtttctgattcttcaagaaaa
gcccaaaagcgtcgaaaaacaacagaaactgggtgggctttcactgggaatgaatatgct
agcaagaaggcaggtggtgatctgaagaggaaggacaagcttgaaccgtatgcatattgg
cctcttgatcgcaagatgatgagccgtagacctgagcatcgtgcagctgctagaaaaggt
atgacaagtgtggtgaaaatgaccaagaagctcgagggcaagagctcctcaactgcactt
tccatgaagctcatgagattcaagaatcaaaagaaaagcaacaaaagaaaaaacaggtga
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