Manihot esculenta (cassava): 110603637
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Entry
110603637 CDS
T05761
Name
(RefSeq) eukaryotic translation initiation factor 3 subunit B
KO
K03253
translation initiation factor 3 subunit B
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110603637
03012 Translation factors [BR:
mesc03012
]
110603637
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
110603637
Translation factors [BR:
mesc03012
]
Eukaryotic type
Initiation factors
eIF-3
110603637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eIF2A
WD40_WDHD1_1st
RRM_1
ANAPC4_WD40
Beta-prop_ELP1_1st
WD40_Prp19
B-prop_COPA_B_2nd
Motif
Other DBs
NCBI-GeneID:
110603637
NCBI-ProteinID:
XP_021597132
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Position
16:33268779..33275116
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AA seq
720 aa
AA seq
DB search
MADVMLMNEIESRAAEAGIDLSLVDLNSIQLPPGENFGIISDDEDVYQEEQLDFETGFGN
IIVVDNLPVVPREKFEKLEGVIRKIYGQIGVIKDDGIWMPVDPDTQKTLGYCFIEYNTPQ
EAELAKEKTNGYKLDRSHIFAVNMFDDFDKFMRVPNEWAPPEFRPYVPGENLQHWLTDEK
ARDQFVIRAGSDTEVFWNDARQLKPDPVYKRAYWTESFVQWSPLGTYLATVHRQGAAVWG
GASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINVFDVRTGKVMRD
FRGSADEFAIGGTGGVAGVSWPIFRWGGGKDDKYFAKIGKNMISVYETETFSLVDKKSLK
VENVMDFSWSPTDPILALFVPELAGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS
NGDYLAVKVDRYTKSKRTTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA
VIHGDSPRPDVSFYSMRTSHNTGRVSKLTTLKGKQANALFWSPSGHYILLAGLKGFNGQL
EFYNVDELETMATTEHFMATDIEWDPTGRYVATSVTSVHHEMENGFNIWSFNGKLLYRIL
KDHFFQFLWRPRPPSFLSPEKEEEIANNLKKYSKKYEAEDQDVSLQLSEQDREKRRMLKD
EWDKWVNEWKRLHEEEKLERQKLRDGEASDEEEEYEAKEIEVEELLDVSEEVLSFEFGQE
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtgatgttaatgaatgagatagagtctcgggcagccgaggctggtatcgat
ctttcccttgtcgatctcaactccattcagcttcctcctggagaaaattttggaatcatt
agtgatgatgaagatgtttaccaagaagaacagctggattttgagaccggctttggtaac
attattgttgttgataatctgccagttgttccccgagaaaaatttgagaagcttgaaggt
gtcattcgcaaaatttatggccagattggtgtaattaaggatgatggcatttggatgcct
gttgatcccgatacccagaaaaccttgggttactgcttcattgagtataacactcctcag
gaagctgaactagctaaggagaaaacaaatggatacaagttggacaggtcacatatcttt
gctgtcaacatgtttgatgactttgacaaatttatgagagttccaaatgagtgggcacct
cctgaattcaggccatatgttccaggggaaaatcttcaacattggcttactgatgaaaaa
gctcgagatcaatttgtgattcgtgctggctcagataccgaggttttctggaatgatgca
agacagttgaaacctgatcctgtttacaaacgagcttattggactgaaagttttgtacag
tggtctcctcttgggacgtacttggcaacggttcacaggcaaggtgctgctgtctggggt
ggtgcaagcacctttaataggttaatgcgttatgctcatccccaggttaaactgatagac
ttttctcctggtgagaaatatctggtgacctatagcagccatgaaccaagcaatcctcgt
gatgcaaataggatcgtgataaatgtttttgatgtcagaactgggaaagtgatgagggat
ttcaggggcagtgctgatgaatttgcaattggaggaactggtggtgttgcaggggtttct
tggcccattttcaggtggggtggtggaaaagatgacaagtactttgctaaaattgggaaa
aacatgatctctgtctatgaaactgagaccttcagtcttgttgacaagaagtctcttaag
gttgaaaatgtcatggacttcagttggtcaccaactgatcctattctggcactttttgtt
cctgaacttgctggtggtaatcaaccagcaagggtgtctcttgttcaaattcctagtaaa
gaagaattaaggcagaagaatcttttcagtgttagtgattgcaaaatgtactggcaaagc
aatggagactatcttgctgtaaaggttgatcgttatacaaaatcaaagagaaccacttac
acaggctttgagcttttccgaataaaggagcgggacatacccatagaagtattggaactt
gacaataagaatgataagatcattgcctttgcttgggagcctaagggtcacaggtttgca
gttattcatggggatagcccaaggcctgatgtaagtttttactcgatgaggacttctcat
aatactggtcgggtttcaaagctcactactctcaaaggcaaacaggcaaatgcgcttttc
tggtcaccttctggccactatatattacttgctggattgaagggttttaacggacagttg
gaattctataatgtcgatgagcttgagaccatggcaacaactgagcattttatggcaaca
gatattgaatgggatcctactgggaggtatgttgcaacttcagttacttcggttcatcat
gaaatggaaaatggattcaatatctggtctttcaatggcaagctactttatcggatactt
aaggatcacttcttccagttcttgtggcggccaaggccaccatccttcttgagtcctgaa
aaggaggaagaaatagcaaacaatttgaagaagtatagtaagaagtatgaggcagaggac
caagatgtttcattgcaattgagtgagcaggatcgtgagaagcggagaatgttgaaggat
gaatgggacaaatgggtcaatgagtggaaacggttgcacgaggaagaaaaattggagagg
cagaaattgagggatggagaagccagtgatgaagaggaggagtatgaggccaaagaaata
gaagtagaggagttgttggatgtttccgaggaggttctttcatttgaatttggacaggag
taa
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