Manihot esculenta (cassava): 110603647
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Entry
110603647 CDS
T05761
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110603647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110603647
03041 Spliceosome [BR:
mesc03041
]
110603647
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110603647
Spliceosome [BR:
mesc03041
]
Complex B
Other components
Prp19-related factors
110603647
Complex C
110603647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
UTP6_C
ARM_TT21
ARM_TT21_C
NRDE-2
PPR
Motif
Other DBs
NCBI-GeneID:
110603647
NCBI-ProteinID:
XP_021597152
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All DBs
Position
16:2407678..2413196
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AA seq
917 aa
AA seq
DB search
MSISRELYPSQDDLLYEEELLRNPFSLKLWWRYLIARREAPFKKRFIIYERALKALPGSY
KLWHAYLTERLEIVRNLPITHSQYETLNNTFERALVTMHKMPRIWIMYLQTLTNQKLITR
TRRTFDRALCALPVTQHDRIWELYLRFVSQEGVPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSRLWQEAAERLASVLNDDQFYSIKGKTKHTLWLELCDLLTRHAKEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRGLFEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESMV
AHKMENLDLSDEEEDELEENGSLQDEDVRLEVNSKFEKKILSGFWLHDDNDVDLMLARLE
YLMDRRPELANSVLLRQNPHNVEQWHRRIKLFEGNPTKQILTYTEAVRTVDPMKALGKPH
TLWVAFAKLYENHNDLVNARVIFDKAVQVNYKTVDNLASIWCEWAEMEIRHKNFKGALEL
LRRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWTFYVDLEEGLGTLESTRAVYERILD
LRIATPQIIINYSLLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSK
LERARELFEHAIEMTPADSVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNEKLEMY
KIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGEIDRARGIYVFA
SQFADPRSDEDFWNEWHEFEVKHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQR
LNIDEAKDKLKLAGVPEDEMAALERQLAPVANNAKAKDSSRKVGFVSAGVESQPDGAMKG
NANQEDIELPEESDSEDDEKVEITQKDVPSAVFGGLVRKREETEKEELGDHATAAKDKDG
GAGPLGALERIKRLKRG
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatttctagagagctttacccttcccaggatgatcttttatatgaagaggagctg
ttgcgtaatccattcagcctcaagctctggtggcgctacctaatagcccgccgtgaagca
cctttcaaaaagcggttcattatctatgagagagccctcaaagctttaccagggagctac
aagctttggcatgcatatcttactgagcgtctcgaaattgtcagaaacctacccattact
cactctcaatatgaaaccctgaacaatacatttgaaagagcattggttactatgcataaa
atgcccagaatttggattatgtacttgcaaacccttaccaaccaaaaattgattacccgc
acgcgtagaacttttgatagagcactctgtgcattgcctgtcactcagcatgataggatt
tgggagctatatttgaggtttgtgagccaagagggcgtgccaattgagacttcacttcgg
gtttataggaggtacttgaaatatgaccctagtcatattgaggattttattgaatttttg
gtgaattctcgtctttggcaagaagcagctgagagactagcttcagtgttgaatgatgat
cagttttattcaataaaggggaaaacaaagcatacattatggctagaattgtgtgatttg
cttactagacatgcaaaggaagtgtctgggttgaatgttgatgccattattagaggtggg
attaggaagtttacagatgaggttggcaggttgtggacatcgcttgctgattattatatc
aggaggggtttgtttgagaaggcaagggatatttttgaggaggggatgactacagtggtt
acagtaagggacttcagtgttatatttgatgcatattcacagtttgaagagagtatggtt
gctcataagatggagaatttggacttgagtgacgaggaagaggatgagttggaggagaat
ggctctttgcaggatgaagatgttcgtttggaagtgaattccaagtttgagaagaagata
cttagtgggttttggttacatgatgataatgatgtggatttgatgctagcccggttggaa
tatcttatggatagaaggcctgaattagccaatagtgtacttttgcgacaaaatccacac
aatgtggagcaatggcacaggagaattaagctttttgagggtaatccaactaaacagata
ctgacttatactgaggcagtaagaacagttgatccaatgaaagctttgggaaagccccac
actttgtgggtcgcttttgccaagttgtatgagaatcataatgaccttgtcaatgcaaga
gtaatttttgataaggcagtgcaagtgaactataagactgtagataatctagctagcatt
tggtgtgaatgggctgaaatggaaattagacacaaaaatttcaaaggtgcacttgagttg
ttgaggcgggccacagcagaaccatcagttgaagtgaaaagaagagtggctgctgatggc
aatgaacctgtccagatgaagttgcacaagtccttgagactctggaccttttatgttgat
ttggaagagggacttgggaccttggagtccactcgagcagtttatgagcggatattggac
ctgagaatagccacaccacagatcatcatcaattattcattgcttctagaagaacataaa
tactttgaagatgcatttaaggtttacgaaaggggagtgaaaatattcaagtaccctcat
gtgaaagacatatgggttacatatctttcaaagtttgtgaagagatatggaaagtcaaaa
ctggaacgagcgagagagttatttgaacatgctattgaaatgactcctgcagattccgtt
aaacctttgtatcttcaatatgcaaagctggaagaggattatggtttggcaaagcgagcc
atgaaggtttatgatcaagcaactaaggctgtcccaaataatgaaaaactggagatgtat
aaaatttatattgcccgtgcagctgagatatttggtgtcccaaaaacaagagaaatatat
gagcaagcaatagagtctggtcttcctgacaaagatgtaaagacaatgtgcttgaagtat
gctgagttggagaagagcctgggagagattgatcgagctcgtggaatatatgtatttgca
tctcaatttgctgacccgcgatctgacgaagatttctggaatgagtggcatgaatttgag
gtgaaacatggaaatgaagatacatttcgagaaatgctgcgtattaaacgaagtgtttct
gcaagctatagtcagacacactttattctgccggagtatttaatgcagaaggatcaaagg
ctgaatattgacgaggcaaaagacaaattgaaactggctggggtccctgaagatgaaatg
gctgcactagagaggcaattagcccctgtggccaacaatgctaaagctaaagatagtagc
aggaaggtgggttttgtgagtgctggggtggaatcacaacctgatggggcaatgaaaggt
aatgccaaccaagaggacattgaattgccagaagaaagcgactcagaagatgatgaaaag
gtggaaattacacaaaaagacgttccatctgctgtctttggaggattggtcaggaaaagg
gaagagactgaaaaggaagaacttggagatcatgccacagctgctaaggataaggatggt
ggtgcaggcccccttggtgcccttgagagaataaagagactaaaacggggatga
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