Manihot esculenta (cassava): 110603841
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Entry
110603841 CDS
T05761
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
110603841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mesc04121
]
110603841
Ubiquitin system [BR:
mesc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
110603841
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_6
LRR_4
F-box-like
LRR_8
F-box
Motif
Other DBs
NCBI-GeneID:
110603841
NCBI-ProteinID:
XP_043807879
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Position
16:complement(2252759..2260135)
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AA seq
586 aa
AA seq
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MDPNSKRKRESHESLSESTRSSPFPDEVLERVLGLLKSNKDRSSVSLVCKDWYNAESWSR
THVFIGNCYSVSPEIVARRFPKIRSVTLKGKPRFSDFNLVPRNWGADIQSWLVVFASKYP
FLEELRLKRMSVTDESLEFLALNFPNFKALSLLSCDGFSTDGIAAIATHCKNLTELDIQE
NDIDDKNGNWLSCFPENFSSLEVLSFANLNSEVNFDALERLVSRCKSLRVLKVNKTVSLE
QLQRLLVCTPQLTELGTGSFSQELTARHYTELENTFNHCKKLDTLSGLWEAMAPYLPTLY
PACTSLTFLNLSYAILQSLELANLLHHCPQLRRLWVLDTVEDKGLEAVGSNCPLLEELRV
FPADPFDEDIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLC
IMNPGQPDYITNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFAYIGRYAKNLETLSVAF
AGSSDWGMQCVLGGCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCNVTMNGCRL
LAREMPRLNVEVMKEEGSDDSQADKVYVYRSVAGPRRDAPPSVLTL
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggatccaaattcgaagaggaagagggagtcgcacgaatcgctatccgagtcaactcgt
tcatctccatttcctgatgaggtactggagcgggttctgggtcttttgaaatctaacaag
gaccggagttcagtttctcttgtatgcaaggattggtacaacgcggagagctggtcgcgc
actcatgtttttatcggaaactgttattccgtttctcctgagatcgttgcccgtcggttc
cccaaaatccggagcgttactctcaaagggaagcccagattctcggatttcaatttggtc
cctaggaattggggtgctgatatccagtcttggcttgtcgtttttgcctccaaataccca
tttctagaggagcttaggcttaaaagaatgtctgtcactgacgagagtttggagtttttg
gctctcaacttccccaactttaaagctctatcgcttctgagctgtgatggattcagtacc
gatggcatagcagccattgctactcattgcaagaatttgactgagcttgacatacaggag
aatgacattgatgataagaatgggaattggttgagctgctttcctgaaaacttttcatca
ttggaagtacttagttttgccaacctgaatagtgaagtcaattttgatgcacttgagaga
ctagtaagtaggtgcaaatcattaagggttctgaaggtcaacaaaactgtttccttggaa
cagctgcaaaggcttcttgtttgcaccccacaattaacagagctcggtactggctctttt
tcccaagagctcactgcccgccactacactgagcttgaaaatacattcaaccattgcaag
aaacttgataccctttctggtttatgggaagcaatggcaccatatttaccaactctctac
cctgcttgtaccagcttgactttcttaaatttgagttatgctattttgcaaagtcttgaa
cttgctaatcttcttcatcactgcccacagcttcgtcgcctctgggtcctggacactgta
gaggacaaaggtctggaggctgttggatcaaactgtcctttgctggaggaactccgagtc
ttccctgctgatccctttgatgaagatattatccatggggtgactgaagcagggtttgtt
gctgtgtcttatggttgtcggagacttcattatgttctctatttttgccggcagatgact
aatgctgcagtagcaacaattgtgcaaaactgcccaaatttcacccacttccgtctctgc
atcatgaatccaggtcaaccagattacattacaaatgaacccatggatgaggctttcggt
gcagttgtgaagacttgctctaaacttcagagactttcagtctcaggtctcttgactgac
ctgacatttgcgtatattgggaggtatgccaaaaatttggaaactctctcagtagctttt
gcaggcagcagtgactgggggatgcaatgtgtgctgggaggttgtccaaaattgaggaaa
cttgagataagggattgtccatttggaaatgcagcacttctatcaggtttggaaaaatat
gaatctatgaggtcactttggatgtcatcctgcaatgtgacgatgaatggctgtcggcta
ttggcaagggagatgccgagattgaatgtggaggtgatgaaagaggaggggagtgatgac
agtcaggctgataaagtttatgtttaccgttctgttgcagggccaagaagggatgcccct
ccttctgtcctcactctttga
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