Manihot esculenta (cassava): 110603963
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Entry
110603963 CDS
T05761
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03013
Nucleocytoplasmic transport
mesc03015
mRNA surveillance pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110603963
09122 Translation
03013 Nucleocytoplasmic transport
110603963
03015 mRNA surveillance pathway
110603963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110603963
03041 Spliceosome [BR:
mesc03041
]
110603963
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110603963
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110603963
Spliceosome [BR:
mesc03041
]
Complex C
Other components
EJC/TREX
110603963
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110603963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
110603963
NCBI-ProteinID:
XP_021597661
LinkDB
All DBs
Position
16:complement(32376719..32382930)
Genome browser
AA seq
427 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEEEKVPDSVAKVNGESAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVHIKTHKDLLKNECPHIVVGTPGRILAL
ARDKELSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVNR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaacaagagacaacgatgcttatgaggaggagcttctcgactacgaggaagaa
gaagagaaagtccctgactctgttgctaaagtcaatggcgaatccgccaagaagggctat
gttggaatacacagttccggattcagagacttccttttgaagccagagcttctacgtgcc
attgtggactcgggatttgagcatccttctgaagttcaacatgagtgtatccctcaagca
atcttgggcatggatgtcatctgtcaagctaaatctggaatggggaagactgctgtattc
gttttgtccactctccagcaaattgagcctacatctggccaagttattgctcttgttctg
tgtcatactagggaattggcatatcagatatgtcatgagtttgagaggttcagtacgtac
ttgcctgatatcaaggttgccgtcttttatggtggtgttcatatcaaaactcacaaggat
ttattgaaaaatgaatgcccacatattgttgttggcacacctggaagaatactggcactg
gctagagataaggaactttcattgaagaatgtgaggcattttattcttgatgaatgtgac
aagatgcttgaatcacttgacatgaggagagatgtgcaggagatcttcaagatgactcct
catgataaacaagttatgatgttttctgcaacactcagcaaagaaatccgcccagtctgc
aagaaatttatgcaagatcccatggaaatttacgttgatgatgaagccaagttgacccta
cacggtctcgtacagcactacatcaaattgactgagctggagaaaaaccggaagttgaat
gatctccttgatgcactggacttcaatcaagttgttatttttgtcaaaagtgtgaacaga
gctgccgagcttaacaagttacttgtggagtgcaactttccctcaatttgtatccattct
ggaatgtcccaagaagaaaggttgacacgctacaagggattcaaggaggggcataaaagg
attcttgtggccactgatttggttgggcgagggattgatatcgaacgtgtgaacattgtt
atcaactatgacatgccagactctgccgacacttatctacacagagttggtagagctggt
aggtttggcactaaagggcttgcaattacatttgtatcatctgcttcagactctgatgtt
ctaaatcaggttcaggagaggtttgaggtggacataaaagagcttcctgagcagattgat
acttctacatatatgccttcttag
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