KEGG   Manihot esculenta (cassava): 110604019
Entry
110604019         CDS       T05761                                 
Name
(RefSeq) UBP1-associated protein 2C
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110604019
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110604019
   03041 Spliceosome [BR:mesc03041]
    110604019
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     110604019
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     110604019
Spliceosome [BR:mesc03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    110604019
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_10 NMB0537_N AbiGi
Other DBs
NCBI-GeneID: 110604019
NCBI-ProteinID: XP_021597732
LinkDB
Position
16:complement(4832471..4838119)
AA seq 391 aa
MDFTKKRKAEENGTAVIPSLPAAVASTSLTPEEIRKVIEPFTKEQLLDILQTAAVRHPDV
LDSIRTVADGDISLRKLFIRGLSTNTTTETIRSLFASYGELEEAVVIFDKNTGKSKGFGF
ITFKHVDGALIALKEPSKKIDGRMTVTQLASAGLSNPGSSSGDVWSRKIYVGNVPYDIPS
ERLLSFFLTYGEIEEGPLGFDKATGKSKGFAFIIYKTEEAAKAAIADTVKMIDGHQILCK
MAVDNKKAKTEGGVGGDNAQSQPQPPPQPQPQSSMPGSHYGVPGSLPPYGGFSGLGSGGY
GLNTSLPGSIGGGSNAGPYGVPQYGGPSSGEFGGMNNAGNFMYRMPPSSIGMASAGYPAG
APYGLSQQHHSSPLPPRVPPGGMYQGMPPYY
NT seq 1176 nt   +upstreamnt  +downstreamnt
atggacttcacaaagaaacgaaaagccgaggaaaatggcaccgcagtaatcccttctctt
cctgccgccgtagcctcaacctccttaaccccagaagagatccgcaaggtaatcgaaccc
ttcacaaaggagcagcttctcgatatcctccaaacagccgcagtccgtcaccccgacgtc
ctcgattccatccgcaccgtagccgatggcgacatctctctccgcaagctcttcatcagg
ggcctttccaccaataccaccaccgagaccatccgctctctgtttgcctcttatggcgag
cttgaggaggccgtcgtaatattcgacaagaatactggaaaatccaaggggtttggtttc
atcacgtttaaacatgtagacggtgctttaatcgcgctgaaggaaccaagcaagaaaatt
gacggcaggatgactgttacccagttggcctccgcgggtctatcgaatcctggttctagt
agtggcgatgtttggtcgaggaagatctacgttgggaatgtgccgtatgatataccttca
gagagattgttaagttttttcttgacgtatggggagattgaagagggacctctagggttt
gataaggccacgggtaaatcaaaggggtttgcttttattatatacaagactgaggaggct
gccaaggctgccattgctgatactgtaaagatgattgatgggcatcaaattctctgcaaa
atggcggttgataataaaaaagccaagaccgaaggtggtgtaggtggtgataatgcacaa
tcacagccgcagccaccgccacagccacaaccacagtcttcaatgcctggatctcactat
ggtgttcctggaagtttgccaccctatggagggttttctggattaggtagtggtggatat
ggattgaatacttcgttgccaggttcgattggtggtggtagtaatgctggtccatatggt
gttccacagtatgggggaccaagttctggtgagttcggtggaatgaataatgctggcaat
tttatgtataggatgcctcctagttctattggaatggcttctgcaggatatccagctggt
gccccttatgggctgtctcagcaacaccattcatcgccattgccccctagagttccacct
ggagggatgtatcagggcatgccaccatattattga

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