KEGG   Manihot esculenta (cassava): 110604221
Entry
110604221         CDS       T05761                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110604221
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110604221
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     110604221
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR90_POC16_2nd WDR55 ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_Aladin Beta-prop_EIPR1 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_WDR19_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_SPT8 Beta-prop_WDR35_TULP_N eIF2A Beta-prop_DCAF12 Cytochrom_D1 Beta-prop_VPS8 Ge1_WD40 Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Nbas_N Tricorn_2nd Beta-prop_WDR11_1st RMC1_N CFAP43_N DUF5711 PD40 WD40_like
Other DBs
NCBI-GeneID: 110604221
NCBI-ProteinID: XP_021598057
LinkDB
Position
16:complement(30481927..30484440)
AA seq 321 aa
MKLAGLKSIENAHDESVWAATWVPATTSRPALLLTGSLDETVKLWKPDELHLERTNTGHC
LGVVAVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVA
GGGSASVKLWDTATWKLIASLSVPRPEGPKPSDKNSSKKFVLSVSWSPDGRRLACGSMDG
TISVFDVARAKFLHHLEGHFMPVRSLVYSPIDPRVLFSASDDAHVHMYDAEGKSMITAMS
GHAGWVLSVDASPDGSAIATGSSDRTVRLWDLNMRAAVQTMSNHADQVWGVAFRPPGGTG
VRAGRLASVSDDKSISLYDYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaaacttgcgggcctaaaatctatcgagaacgcacacgacgagtctgtatgggctgcc
acgtgggtccctgccaccaccagccgaccggcgcttcttctcaccggatctcttgatgag
actgtcaagctttggaagcccgacgagcttcaccttgagcgcaccaacaccggacactgt
ctcggtgtcgttgccgtggcggcacatccctcaggaatcatagctgcgtccgcctcgctt
gatagtttcgttcgagtttttgatgtcgacactaatgctagcattgcgactctcgaagct
cccccatcggaagtgtggcaaatgcagttcgatcccaagggtaccactcttgcagttgct
ggcggaggtagtgcatcagtcaagctttgggacactgctacatggaaactgattgcgtcc
ctatcggttcctcgtccagaaggacccaagccatcagataagaatagcagcaagaagttt
gtcttgtcagtttcgtggagtcctgatggaagaagacttgcttgtggctcaatggatggc
actatttctgtttttgacgtagctcgagcaaaatttctacaccatctagaaggccatttc
atgcctgtgcgctctctcgtatattctcctatagatcctcgggtgctcttctctgcatca
gatgatgctcatgtgcacatgtatgatgctgaggggaaaagcatgattacagcaatgtca
ggtcatgcaggctgggtcttaagtgttgatgcaagccctgatggatcagctattgcaaca
ggctctagtgatagaactgtgaggttatgggatctcaacatgagggctgctgtgcagaca
atgagtaatcatgcagaccaggtctggggagtagcatttcggccacctggagggactggt
gtccgagctggtcgccttgctagtgtatcagatgacaaaagtatatccctctatgattac
tcctga

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