Manihot esculenta (cassava): 110604446
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Entry
110604446 CDS
T05761
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110604446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mesc03032
]
110604446
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110604446
DNA replication proteins [BR:
mesc03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
110604446
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
110604446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
TopBP1_BRCT0
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
110604446
NCBI-ProteinID:
XP_021598300
LinkDB
All DBs
Position
2:complement(13225104..13234309)
Genome browser
AA seq
981 aa
AA seq
DB search
MLKAKTFKGANVFMSRNLVPPEVFDTLLDALKLNGAEVFLCCDPSRNGPNDYHIISSPDH
EKFEDLRARGCNLLGPQCVLSCAKEHRALPKQGFTCCLAMDGVKVLASGFEMVEKDKIEK
LVTAMGGQLLAKASLDVSFVIVKNVLAAKYKWALNVLKKPIVTINWLYQCWSEHRVVPQE
SYRVLPFSGLMICVTRIPADERKEIEKIITQNGGKYSAELTKKCTHLICDAPEGDKYKVA
RRWGHIHIVTRKWFDQSVARRACLNEESYPVQGGSISSNKNLKCPSVAQPIQDNNIVNSL
SVQSSIAAESSSPDFPCAVFPESDLEATLSQNMSSMFSDPPVFMKAGDDEIPAENPTNET
NLDSCIANDSQSEDSELYLSECRISLVGFEASELRKLVNMVRRGGGSRYMSFNDKLTHIV
VGAPTEVEKKELRGLAALGVINVVRPTWLEDCDRERKETPVLRKHIAYDLLLPKDSANSI
KGALVGMASMNQGRVSSTHSSLHSDHLMGGTNFGNGKASFLEKDKEEKPEINLNRITVDT
TLRQSQQNLLSVVDNRKKNGKQHDSRDQNQKPFPVFKGKTFHFSDSFPEDRRAEIVQWVS
QGGGDMVEDHVKQNVHFTIECHGVVPRSVDVPRTTYVSSHWVRSCLEDGCLLDVGGHIMY
SPLPCRIPLPGFESFRFCISQYEEKDRLLLRNLCFVLGAKFVEKLTRKVTHLLCKFTSGP
KYEAACKWGICSITSEWIYECVRQNEVVTVDHFRPREVTSQDQDAGVCTVSQFPTQADRM
ISGENPSQFESQSQNLRNAPSLTGGSRINSLGEELQESSDYCKKARLSESDVQKELLSSG
VHLDDSICKIDLVGGNNKNDNGEPSHSVPDVAAAIEDLLEQTSKIHDQKSPGRNGCDKNL
YSSDTVLGEDHGSHHVLGLPKHWLNRTGKRDELPNPSSDVNRGMYDGFSETQTESQVVGY
EEDLSGRQMLIDRVRTRSSMA
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaggcgaagacattcaaaggagcgaatgtcttcatgtccaggaacctggtgccg
ccggaagtcttcgacactcttcttgatgctctcaagctcaacggtgccgaagtctttctc
tgctgcgatccttcaaggaatggccccaatgattatcacatcatctcctctcctgatcac
gagaaattcgaggatctcagagctagaggctgtaatttgctaggtcctcagtgtgtgctt
tcatgtgcaaaagagcatagagcactgcctaaacaaggcttcacatgttgtcttgcaatg
gatggtgtcaaagttctggcatccggctttgaaatggttgaaaaggacaagatagaaaag
ttggtaacagcaatgggtggtcagttgcttgcaaaggcatctttggatgttagtttcgtc
attgtaaagaatgttttggctgcaaagtacaagtgggctctaaatgttctgaagaaacca
attgtaactattaattggttatatcaatgctggagcgagcatcgtgttgttcctcaagaa
tcataccgggtccttcccttttctggattaatgatatgtgttaccaggatacctgcagat
gagcggaaggaaattgaaaaaattatcacgcaaaatggtgggaaatactctgctgagctg
acgaagaagtgcacacatttgatctgtgatgctcctgaaggtgataagtacaaggttgct
cgaaggtggggccatattcatattgtaacccggaaatggtttgatcaatctgttgctaga
cgagcatgtcttaacgaggagtcttatcctgttcaaggtggttctatatcttcaaataaa
aatttgaagtgtccctcagtggcacagcctatccaagacaacaatattgtaaattcacta
tctgtgcagtcctccattgctgcagaatctagttccccagattttccttgtgcagtgttt
cctgagtcagatttagaagctaccctctcgcagaacatgtcttccatgttttcagatcct
cctgtctttatgaaagcaggagatgatgaaatccctgcagagaaccccacaaatgaaaca
aaccttgatagttgtatagccaatgactctcagtctgaagatagtgaactctacttgtca
gagtgtaggatatcacttgttggctttgaagcttctgagctgcgtaaattagttaatatg
gtgcgaagaggtgggggttctcggtatatgtcattcaacgataaattaacacacattgta
gttggggctccaacagaggttgaaaaaaaggagctgaggggccttgctgccttgggtgtt
attaatgtggttagaccaacctggcttgaagattgtgatcgtgaaaggaaagaaacccct
gttctcaggaaacatattgcctatgatttacttcttcctaaagattctgcaaactccatt
aaaggagcactagttggcatggctagcatgaatcaaggtagagtctccagtacccattca
agccttcactctgatcatttaatgggtggtacaaactttggcaatgggaaggcctcattt
ttggagaaagacaaggaagagaaaccagaaatcaacctgaacagaataactgtggacaca
accttgagacagtctcaacagaacctgttatctgttgttgacaatcgaaagaagaatgga
aagcagcatgattccagggatcaaaatcagaagccatttcctgttttcaagggaaaaaca
tttcacttttcagattcctttcctgaagataggagagctgaaattgttcagtgggtgagt
caagggggaggggatatggtggaagatcatgtaaaacagaatgtgcactttaccattgaa
tgccatggtgtggtaccaaggtctgtagatgtcccccgaactacttatgtatccagtcat
tgggtcagatcttgtttagaggatggatgcttgctggatgttggtggtcatattatgtat
tctccacttccttgccggattcctttgcctggttttgaaagcttccgattttgcatctca
cagtatgaagagaaagatagactactcctaagaaacttgtgctttgttcttggagctaaa
tttgtggagaaactgacgagaaaagtcactcatctactatgcaagtttaccagtgggcca
aaatatgaggctgcttgtaagtggggcatatgctcgattacttctgagtggatttatgag
tgtgtcaggcagaatgaagttgtcacagtggatcactttcgtccaagagaagttacttct
caagaccaggatgcaggagtatgcactgtgagccagtttcctactcaagctgatcgaatg
atatctggagagaatccatctcaatttgaaagccagtcacaaaaccttagaaatgcgcca
agtctgacaggtggtagtagaattaacagccttggggaagaactccaagaatccagtgac
tattgtaaaaaggcaaggctttcggaaagtgatgttcaaaaggagctgctttcttctgga
gttcatttagatgattcaatctgcaagatagatctcgttggaggaaacaataaaaatgat
aatggagaaccttctcatagtgttcctgatgtagcagctgctattgaagacttactagag
cagacaagcaagattcacgatcagaagtcaccagggaggaatgggtgtgacaaaaatctt
tattcatctgatacagtacttggtgaagaccatggctctcaccatgtccttgggttacct
aagcattggttaaatagaactgggaaaagagatgagctacctaatccttcttcagatgta
aatagaggaatgtatgatgggttcagtgaaactcaaacagagtcgcaggttgttggctat
gaagaagatttgtcgggcaggcaaatgcttatagatagggttcgaactcgaagtagcatg
gcctga
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